Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0861 ATGTTGCTTTCCCCGTTCGTCAAATTCCTTTTCTTGGAAGGAGTTGAACAAAACCAAAAGGGTGAGGTCGTAAGCGAAAAGCAAAACAAATACAAACATCGCTTCCCGTCTTCCTCTCTATATCTTCTCCCTCACATCTCCTCAATTTTTTTGTGCAATTTCTCTCTGCATCCACCTCCATCTATTTCATCTTCTCTCTCAGGACCTGCTGATATCGATTCCATGGCGACCATCGGCCACAACAATCTCAATGCAAAATTGGTTCTTCTTGGTGACATGGGAGCCGGAAAGTCCAGTCTCGTCTTGCGCTTTGTCAAGGGCCAGTTTCTTGAATTCCAGGAATCTACAATTGGAGCGGCGTTCTTTTCACAGACACTAGCGGTAAATGATGCCACAGTGAAGTTTGAGATATGGGACACAGCTGGGCAGGAGAGGTACCACAGCTTAGCTCCGATGTACTATAGAGGTGCTGCTGCGGCCATAATTGTCTATGACATTACTAGCACAGAGTCATTTGCACGGGCTAAGAAGTGGGTGCAAGAACTTCAGAAACAAGGTAACCCTAACATGGTTATGGCGCTTGCTGGGAACAAAGCTGATTTAGAAGATAAGAGGAAAGTGACTGCTGAAGAGGCACGTGTCTATGCTGAAGAAAATGGCCTTTTCTTCACGGAGACCTCTGCCAAAACAGCCGTAAATGTCAATGATACATTTTATGAAATAGCTAAGAGATTGCCCAGAGCTCAGCCTGCTCAGAATCCAGCTGGGATGGTTCTGGTGGACAGACCAGCGGAAAGTTCCCAAGCTGCATCATGCTGTTCCTAA 825 0.4606 MLLSPFVKFLFLEGVEQNQKGEVVSEKQNKYKHRFPSSSLYLLPHISSIFLCNFSLHPPPSISSSLSGPADIDSMATIGHNNLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESFARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARVYAEENGLFFTETSAKTAVNVNDTFYEIAKRLPRAQPAQNPAGMVLVDRPAESSQAASCCS* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0861 274 FunFam Ras-related protein RABF2b 76 266 - -
Vvi4g0861 274 SMART ran_sub_2 90 274 - -
Vvi4g0861 274 PRINTS Transforming protein P21 ras signature 188 201 - -
Vvi4g0861 274 PRINTS Transforming protein P21 ras signature 126 148 - -
Vvi4g0861 274 PRINTS Transforming protein P21 ras signature 108 124 - -
Vvi4g0861 274 PRINTS Transforming protein P21 ras signature 85 106 - -
Vvi4g0861 274 PRINTS Transforming protein P21 ras signature 223 245 - -
Vvi4g0861 274 Pfam Ras family 86 245 IPR001806 GO:0003924|GO:0005525
Vvi4g0861 274 CDD Rab5_related 84 246 - -
Vvi4g0861 274 ProSiteProfiles small GTPase Rab1 family profile. 80 274 - -
Vvi4g0861 274 Gene3D - 77 268 IPR027417 -
Vvi4g0861 274 SMART rab_sub_5 85 248 - -
Vvi4g0861 274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 250 IPR027417 -
Vvi4g0861 274 PANTHER - 84 247 - -
Vvi4g0861 274 SMART ras_sub_4 82 248 - -
Vvi4g0861 274 ProSiteProfiles small GTPase Ras family profile. 79 274 IPR001806 GO:0003924|GO:0005525
Vvi4g0861 274 NCBIfam small GTP-binding protein domain 85 241 IPR005225 GO:0005525
Vvi4g0861 274 SMART rho_sub_3 87 248 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0861 Vvi-Chr4 11644214 11658165 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0861 K07889 - vvi:100258211 394.815