Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0807 ATGATTGCGACAAACCCAAAACCCACCCCTCCGGTTTTCCACTTTAACCGGCCAGAGACCCATTCCTTATCACTTCCAAATTTCATAGCCAACCTCAAGCGAGAAGACTCAGAAAACATGGAAGAACTGAAGCCAAGGCCTGCAAATTCATCACCTCTCACCACTTTAAGCTTCCTCGACAGAGCTGCTACTGTTTATGGCGATTGCCCTTCTGTTGTATATAACTCCACCACCTACACCTGGTCTCAAACCCACCATCGATGCCTCCAAGTGGCCTCTTCCATCAAATCTCTCGGCATCGGCAGGGGCCAGGTGGTGTCAGTAGTGGCCCCCAACATCCCCGCCATGTACGAGCTCCACTTCGCTGTACCCATGGCCGGCGCCGTCCTCAACACCATCAACACCCGCCTCGACGCCAAAACTGTTTCCGTGCTACTCCGCCACAGCGAATCAAAGCTCATCTTCGTTGACTACCAGTCTCGCCCTCTCATCCTTGAATCCCTTTCCTTATTCCCTCCTAGCTCTCAACGCCCCCTTCTCGTTCTCATCACCGATGATGAGGACTCGCCACCCTCCACCGTTGATTTCCTCTGCACTTACGAGGATATGGTCGGGAGGGGCGATCCTGAGTTCAAGTGGATACGACCGGAGAGTGAGTGGAACCCCATGATTCTCAATTACACATCTGGAACGACGTCGTCTCCAAAGGGCGTGGTCCACTGCCACAGGGGAATCTTCATCGTCACCGTTGATTCTCTGATCGATTGGTGTGTGCCGAAGCAGCCTGTGTACCTGTGGACCCTGCCCATGTTCCACGCGAATGGTTGGAGCTTCCCCTGGGGAATGGCAGCAGTGGGCGGTACCAACGTCTGTCTGCGCAAATTCGACGCTAGTGTCATCTACGAGGCGATCAGAGTCCACCGCGTGACCCACATGTGCGGCGCACCAGTCGTTCTCAACATGCTCTCCAACTGGCCTGGCACCGAACCGCTCAAGAACCCGGTTCAGATCCTCACCGCCGGAGCTCCTCCCCCGGCCGCCATACTGCTCCGGACCGAGTCTCGAGGTTTTATTGTGAGTCATGGGTATGGATTGACCGAAACAGGGGGGTTGGTGGTGTCATGCGTGTGGAAGCAGAAGTGGAACCGATTGCCAGCGACGGAGAGGGCGAGGTTGAAGTCGAGGCAAGGGGTGAGGACCGTTGGGATGACAGAGGTGGACGTGTTGGACCCCGGGTCTGGACTCAGCGTGAAGAGAGACGGGTCTTCACTGGGCGAAATCGTGCTGAGAGGTGGGTGCATCATGTTGGGTTACCTGAAAGACCCAAAGGGAACCTCCAAGTCCCTGACCGATGATGGGTGGTTCTTCACCGGAGACGTCGGAGTGATGCACTCAGACGGGTACTTAGAGATCAAGGACCGATCCAAGGACGTGATCATCAGCGGCGGCGAGAACTTGAGCAGCGTGGAGGTTGAGTCGGTGCTCTACACCCACCCAGCGGTGAACGAGGCGGCAGTGGTGGCTCGCCCCGACGATTTCTGGGGCGAGACCCCATGCGCCTTTGTGAGCTTAAAGCCAGAGCGGACGGAGCAGCCTACGGAGAAAGAAATCATGGAATACTGTAGGGCTAGGATGCCGCACTACATGGTGCCAAAGACAGTGGTGTTCGAGGAAGAGCTGCCTAAGACTTCAACGGGGAAGATTCAGAAATTTGTGCTGAGAGAAACTGCCAAAGCTATGGGTTCGTCCCGAGTGAGTCGCATGTAG 1767 0.5586 MIATNPKPTPPVFHFNRPETHSLSLPNFIANLKREDSENMEELKPRPANSSPLTTLSFLDRAATVYGDCPSVVYNSTTYTWSQTHHRCLQVASSIKSLGIGRGQVVSVVAPNIPAMYELHFAVPMAGAVLNTINTRLDAKTVSVLLRHSESKLIFVDYQSRPLILESLSLFPPSSQRPLLVLITDDEDSPPSTVDFLCTYEDMVGRGDPEFKWIRPESEWNPMILNYTSGTTSSPKGVVHCHRGIFIVTVDSLIDWCVPKQPVYLWTLPMFHANGWSFPWGMAAVGGTNVCLRKFDASVIYEAIRVHRVTHMCGAPVVLNMLSNWPGTEPLKNPVQILTAGAPPPAAILLRTESRGFIVSHGYGLTETGGLVVSCVWKQKWNRLPATERARLKSRQGVRTVGMTEVDVLDPGSGLSVKRDGSSLGEIVLRGGCIMLGYLKDPKGTSKSLTDDGWFFTGDVGVMHSDGYLEIKDRSKDVIISGGENLSSVEVESVLYTHPAVNEAAVVARPDDFWGETPCAFVSLKPERTEQPTEKEIMEYCRARMPHYMVPKTVVFEEELPKTSTGKIQKFVLRETAKAMGSSRVSRM* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0807 588 Gene3D - 38 476 IPR042099 -
Vvi4g0807 588 FunFam 2,3-dihydroxybenzoate-AMP ligase 476 581 - -
Vvi4g0807 588 FunFam Long-chain-fatty-acid--CoA ligase FadD 40 476 - -
Vvi4g0807 588 ProSitePatterns Putative AMP-binding domain signature. 225 236 IPR020845 -
Vvi4g0807 588 PANTHER ACYL-ACTIVATING ENZYME 40 583 - -
Vvi4g0807 588 SUPERFAMILY Acetyl-CoA synthetase-like 48 579 - -
Vvi4g0807 588 Pfam AMP-binding enzyme C-terminal domain 490 567 IPR025110 -
Vvi4g0807 588 CDD ttLC_FACS_AEE21_like 51 575 - -
Vvi4g0807 588 Gene3D - 477 587 IPR045851 -
Vvi4g0807 588 Pfam AMP-binding enzyme 60 481 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0807 Vvi-Chr4 9836538 9838304 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0807 40 580 EF-hand Containing Proteins AT1G21540 65.273 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0807 - - vvi:100256407 1121.69