Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0788 ATGAGCTCGCTCCAACTCCTTCAAGCCTCCCCACCCTCTCTAAGCTCTGCCAAGGCTCACAAATTGCCATTATATGGCCTTGATTCATGTTCAACCATGGCCGAGCTCAAGCAGTATCATTCCCAAATCATCCGACTTGGCCTTTCAGCAGATAATGATGCAATGGGCAGAGTGATAAAGTTCTGTGCTATCTCCAAATCAGGTGATTTAAACTATGCTCTCGAAGTGTTTGATAAAATTCCTCACCCTGATGCATACATTTACAATACCATCTTTCGAGGTTACTTGCGGTGGCAGCTTGCCAGAAACTGCATTTTCATGTACTCCCGAATGTTACATAAATCTGTCTCACCCAACAAATTCACCTACCCTCCTCTGATAAGAGCTTGTTGCATTGATTACGCTATTGAAGAAGGGAAGCAAATACATGCACATGTTTTAAAATTCGGGTTTGGTGCTGATGGGTTTTCTTTGAATAATTTGATCCATATGTATGTGAATTTTCAATCTTTGGAGCAAGCAAGGAGGGTTTTTGATAATATGCCTCAGCGGGATGTTGTCTCCTGGACCAGTTTAATTACGGGGTATTCGCAATGGGGTTTTGTCGATAAAGCTCGTGAAGTTTTTGAATTGATGCCTGAGAGAAATTCTGTTTCTTGGAATGCCATGATTGCTGCTTATGTCCAGAGTAACCGTTTGCATGAGGCATTTGCTCTTTTTGATAGAATGAGATTGGAAAATGTGGTATTGGATAAATTTGTAGCAGCAAGTATGTTATCAGCCTGTACTGGATTAGGAGCCTTGGAGCAAGGGAAGTGGATACATGGATATATTGAGAAGAGTGGGATTGAATTGGACTCAAAACTTGCTACAACAGTTATTGACATGTACTGCAAATGTGGTTGCTTGGAAAAGGCCTCCGAAGTCTTTAATGAGTTGCCCCAAAAAGGAATTTCTTCTTGGAATTGTATGATTGGTGGGCTGGCAATGCATGGAAAAGGCGAGGCTGCCATTGAGCTTTTTAAGGAGATGGAGAGGGAGATGGTAGCCCCTGATGGCATCACTTTTGTGAATGTCCTCAGTGCATGCGCTCATTCAGGATTAGTTGAAGAGGGGAAACATTACTTTCAATATATGACTGAAGTTCTTGGTCTTAAGCCTGGTATGGAGCATTTTGGATGCATGGTTGACTTGCTTGGAAGAGCTGGACTGCTGGAGGAGGCAAGAAAGCTCATAAATGAGATGCCTGTGAATCCTGATGCAGGTGTATTAGGTGCTCTTGTTGGTGCTTGTAGAATCCATGGAAACACTGAATTGGGTGAGCAAATAGGAAAGAAAGTAATTGAACTAGAGCCTCATAACAGTGGCCGCTATGTTTTATTAGCTAATTTGTATGCCAGTGCTGGTCGATGGGAAGATGTTGCTAAGGTGAGAAAATTGATGAATGACAGAGGAGTGAAGAAGGCTCCTGGTTTTTCCATGATTGAATCAGAAAGTGGTGTAGATGAATTCATTGCTGGAGGAAGGGCTCACCCACAAGCTAAAGAGATATATGCCAAACTTGACGAGATATTAGAAACTATAAGATCTATTGGTTATGTGCCTGACACTGATGGGGTATTGCATGATATTGACGAGGAGGAAAAGGAGAACCCCTTATACTACCACAGCGAGAAACTTGCAATTGCCTTTGGGTTGTTGAAGACTAAGCCTGGGGAAACTCTTCGCATCTCTAAGAATTTGCGGATATGTAGAGATTGTCACCAAGCAAGTAAGCTTATCTCAAAAGTTTATGATCGTGAAATAATTATAAGGGACAGGAACAGATTCCACCATTTTAGAATGGGAGGGTGTTCTTGTAAGGATTACTGGTGA 1875 0.4208 MSSLQLLQASPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0788 624 FunFam Pentatricopeptide repeat-containing protein 318 552 - -
Vvi4g0788 624 FunFam Pentatricopeptide repeat-containing protein At5g66520 24 182 - -
Vvi4g0788 624 Pfam E motif 434 496 IPR046848 -
Vvi4g0788 624 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 561 IPR046960 GO:0003723|GO:0009451
Vvi4g0788 624 Gene3D Tetratricopeptide repeat domain 292 501 IPR011990 GO:0005515
Vvi4g0788 624 Pfam PPR repeat 157 185 IPR002885 -
Vvi4g0788 624 Pfam PPR repeat 392 416 IPR002885 -
Vvi4g0788 624 Pfam PPR repeat family 216 262 IPR002885 -
Vvi4g0788 624 Pfam PPR repeat family 317 364 IPR002885 -
Vvi4g0788 624 SUPERFAMILY TPR-like 197 473 IPR011990 GO:0005515
Vvi4g0788 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 316 IPR002885 -
Vvi4g0788 624 Pfam DYW family of nucleic acid deaminases 532 624 IPR032867 GO:0008270
Vvi4g0788 624 Gene3D Tetratricopeptide repeat domain 171 280 IPR011990 GO:0005515
Vvi4g0788 624 Gene3D Tetratricopeptide repeat domain 35 170 IPR011990 GO:0005515
Vvi4g0788 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Vvi4g0788 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Vvi4g0788 624 NCBIfam pentatricopeptide repeat 291 319 IPR002885 -
Vvi4g0788 624 NCBIfam pentatricopeptide repeat 320 351 IPR002885 -
Vvi4g0788 624 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Vvi4g0788 624 NCBIfam pentatricopeptide repeat 187 216 IPR002885 -
Vvi4g0788 624 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vvi4g0788 624 Pfam E+ motif 503 525 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0788 Vvi-Chr4 9378968 9380842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0788 14 624 Glycoside Hydrolase AT3G49170 37.037 5.16e-135 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0788 - - vvi:100254802 1257.28