Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0786 ATGGCTGATATTCCTTTGATTGACCAAGGGTTCTATGGAAATGACAGCGGCAGTGATAGAATCGGTGGTGATGAAAATGACGGCGGCCGGATGAACACTGCTCTTGAATGCGCACTCGAAGCTGATATTCCATGCAAAGATAAGCAAATCAGTACAACCGTCTCATCAGTTTTGAAGTCTAGTTGTGTCTGCTTTTTCGATCTGGCTCGTGTGTTCCTTCACCACAAAGAGTCCCCGAATCAGCCTATGCGTCCTTTAGAAGTTCCACCCGGAAACGTGATCTCCATTCATATACAAACTAATGTGACTGTGACGAACAATACCCTAGAGATCCGCTTGTATTGGGCTGGGAAAGGGACAACATGTATCCCTAAGAGAGGAAGATATGGTCCTCTAATATCTGCTATTTCTATATGTCCCAGTAAGTTAAATATTCATGAGCCTCTCATTTCAAAATTAGTACAATTGCTGCAGCTGATAATTAACCAGCAATTAATTGCAACTCTTAGACTTGATTTGGTTTCTTTTTGTTTGAGTCATTCTTCATCTAGTTCTATTTTTGTCTTCTTGTATCTCTCTTCCTTGATCTCTCCTTTGTTGATAGTTTAA 609 0.4072 MADIPLIDQGFYGNDSGSDRIGGDENDGGRMNTALECALEADIPCKDKQISTTVSSVLKSSCVCFFDLARVFLHHKESPNQPMRPLEVPPGNVISIHIQTNVTVTNNTLEIRLYWAGKGTTCIPKRGRYGPLISAISICPSKLNIHEPLISKLVQLLQLIINQQLIATLRLDLVSFCLSHSSSSSIFVFLYLSSLISPLLIV* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0786 202 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 99 160 - -
Vvi4g0786 202 MobiDBLite consensus disorder prediction 1 27 - -
Vvi4g0786 202 Pfam Malectin domain 99 136 IPR021720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0786 Vvi-Chr4 9139429 9153875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0786 99 141 Receptor kinase-like Gene Family AT1G29740 81.395 9.59e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0786 - - vvi:100266879 92.0485