Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0784 ATGTATATAAAGCAGTTTTGTGGTTTTCTGATATTTGGGGTTCGAGTTCAGGTTATTATCGAGGGTTTTAAGAGCTACAGAGAGCAAATTGCTACTGAACCTTTCAGTTCAAAAGTTAATTGCGTAGTTGGCGCTAATGGATCTGGCAAGACGAATTTTTTCCATGCGATTCGTTTCGTACTAAGTGATCTCTTCCAAAACCTGCGCAGTGAAGATAGACATGCACTACTTCATGAAGGTGCAGGACATCAAGTTCTATCCGCTTTTGTGGAGATTGTGTTTGATAATTCTGACAATCGCATTCCGGTTGACAAAGAGGAGGTGCGCTTACGAAGAACTATTGGTCTGAAAAAGGATGAGTATTTCTTGGATGGAAAGCATATTACGAAAACAGAAGTTATGAATTTACTGGAAAGTGCTGGTTTCTCTCGTTCCAATCCTTACTATGTTGTGCAGCAAGGGAAGATAGCATCACTAACATTGATGAAAGACTCTGAGCGACTGGATCTGCTGAAGGAAATTGGTGGCACCCGAGTTTATGAGGAGAGACGACGTGAAAGTCTGAAAATTATGCAAGAAACTGGTAACAAGAGAAAGCAGATAATTCAAGTCGTTCAATACTTGGATGAGCGATTAAAGGAACTGGATGAAGAGAAAGAGGAACTGAGAAAATATCAGCAGCTGGACAAGCAGCGGAAATCTCTAGAATACACTATTTATGACAAGGAACTCCATGATGCTAGGCATAAATTGGGGGAGGTTGAAGAGGCTCGAACCAAAGTTTCTGAAACGTCTACAAGGATGTATAACAGTGTTCTGGAAGCCCATGAAAAGTCTAAGGACTTGGATAAGACATATAAAGATCTAACAAAAGATGTTCAAGGTTTAAACAAAGAGAAAGAATCAACTGACAAGCAGCGATCTGAGGCAATACAGAAGCGCACACAGCTTGAACTTGATGATAAAGATCTAAGAGAAAAAATGTCTGTGAATATTAAGGCCAAGGAGGATGCAGCAAAACAGCTTGAGATTCTACAGAGAGAAATTCAAGACTCAACAGAGGAGCTTCACAAAATTACTCCTTTGTACGATGAGAAAGTCATAGAGGAGAAGGAGATATCTAAAGGAATAATGGAGCGTGAAAAGCAGCTTAGCATTCTTTATCAAAAACAAGGTCGAGCTACTCAATTTTCTAGCAAAGCTTCACGTGATAAATGGCTTCAAAAGGAAATTGATGATCTTGAACGAGTTCGTTCTTCGAATATGGTTCAGGAGAAAAAACTCCAGGATGAAATTCATCAACTCAATGCCGAGGTGAAAGAAAGAGATATCTACATTGATAGTCGCAAAAAGGAAATCGAATTGTTACAATCACTCATCTCTCAGTCTCGTGATGGTTTCAACGATTACAAGGCACAGAGAGACAAGCTGCAGGATGAGCGGAAGTCCTTATGGGGGAAAGAAAGTGAACTCTCTGCTGAAATTGATAAGCTAAAGACAGAAGTTGTAAAAGCCGAAAAGAGTCTTGACCATGCAACTCCTGGTGATATTAGGAGAGGACTGAATTCTGTTCGGAGGATATGCAGAGAGTTTGAAATTCATGGAGTCTTTGGTCCAATTTTTGAGTTACTTGACTGTGATGAAAAATTTTTCACTGCTGTCGAAGTTACTGCTGGAAACAGCTTATTCCATGTGGTGGTTGAAACTGATGAAGTATCAACCCAGATAATTAGGCACCTTAATGCATTGAAAGGTGGACGGGTTACTTTTATACCACTGAATAGGGTGAAGGCTCCACATGTGGCTTATCCGCAGAGCTCTGATGTGATACCTTTATTGAAGAAATTGAAATTCTCACCTAATTATACTCCAGCTTTTGCCCAGGTATTTGCTAGAACAGTGATTTGCCGGGATTTGGATGTCGCTACAAGGGTTGCTCGTACTGATGGTTTAGATTGTATAACCTTAGAAGGTGATCAAGTAAGCAAGAAAGGTGGAATGACTGGGGGATTTTACGATTATAGGCGCTCAAAACTGAAATTTATGAATATAATTAGGCAGAACTCAAAGTCCATCAACATGAAGGAAGATGAGCTGGAGAAAGTTAGGTTTAAGCTTCAAGAGATAGATCAAAAAATTACAGAGCTAGTCACTGAGCAGCAGAAAATTGATGCCAAGCAGGCTCATGACAGATCAGAATTGGAGCAACTAAAGCAGGACATTCTTAATGCTAATAAGCAGAAAGAGTCCATTTATAAAGCTCTTCAAAAGAAGGAAAAGTTGCTTGCAGATGTTCGGACTCAAATTGAGCAGCTCAAAGCCAGTATGGCTATGAAACAGGCTGAAATGGGTACGGATCTCATTGATCACTTAACACCGGAAGAAAAAGATCTGTTATCACGATTGAATCCTGAAATAACAGACCTGAAAGATCAGCTTATCACATGCAGAACGGATCGCATAGAGATTGAAACAAGAAAAGCAGAGCTTGAGACCAATCTAACCACCAACCTTGTTAGACGGAAGCTAGAATTAGAGGCTATAATATCTTCTGCAGAGACTGACATTTGGAGTGGGGAAGCTGAGTTGAAGAGGCAAGAACTAAAGGAGGCTAAGTTGTTGGTTGAAGATTTGACGCAGCGGCTCAAAAGAGTTTCTGAAAATATAGATGAACGAACAAAGCAACTGAGGAAGATCAAAGATGAAAAAAATAAGTTAAAGAGTTTGGAAGACAACTATGAGAGGACGCTCCAGGATGAAGCAAAAGAACTAGAGCAATTATTAAGTAAAAGAAATCTTCTTCTTGCTAAACAAGAAGATTACTCAAAGAAAATCAGAGAATTGGGTCCACTATCCTCAGATGCTTTTGACACATACAAAAGGAAGAGCATCAAAGAATTGCATAAAATGCTTCACAAGTGCAATGAGCAACTCCAACAGTTCAGCCATGTAAACAAGAAAGCACTTGATCAATATATAAATTTCACAGAGCAACGGGAAGAACTCCAGAAAAGGCAAGCAGAATTGGATGCAGGTGATGAGAAAATTAGAGAACTTATATCAGTTCTGGATCAACGGAAGGATGAATCGATAGAGCGGACGTTCAAAGGCGTTGCTAGGCACTTTCGAGAAGTATTCTCTGAACTTGTACAAGGTGGCCATGGGTTTTTGGTTATGATGAAGAAAAAGGATGGTGATCATGGTGATGATGACCATGATGAGGATGGGCCTCGTGAAGCTGACATGGAAGGAAGAGTTGAAAAATACATTGGTGTGAAAGTGAAGGTTTCTTTTACTGGGCAAGGGGAGACACAGTCAATGAAGCAATTGTCAGGGGGTCAAAAAACAGTAGTAGCCCTGACACTAATCTTTGCCATACAACGATGTGATCCTGCTCCTTTTTATCTTTTTGATGAGATAGATGCTGCCCTTGATCCTCAGTATAGAACTGCTGTTGGAAATATGATTCGTCGCCTGGCAGACATGGCTAATACTCAGTTCATAACCACAACATTCCGTCCGGAGCTTGTGAAAGTTGCTGACAAGATATATGGGGTGACACATAAAAACAGAGTCAGCCATGTCAATGTTGTCTCCAAGGAAGATGCATTAGATTTTATTGAGCATGATCAGTCTCACAACACTGATTAA 3651 0.4013 MYIKQFCGFLIFGVRVQVIIEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSEDRHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELHDARHKLGEVEEARTKVSETSTRMYNSVLEAHEKSKDLDKTYKDLTKDVQGLNKEKESTDKQRSEAIQKRTQLELDDKDLREKMSVNIKAKEDAAKQLEILQREIQDSTEELHKITPLYDEKVIEEKEISKGIMEREKQLSILYQKQGRATQFSSKASRDKWLQKEIDDLERVRSSNMVQEKKLQDEIHQLNAEVKERDIYIDSRKKEIELLQSLISQSRDGFNDYKAQRDKLQDERKSLWGKESELSAEIDKLKTEVVKAEKSLDHATPGDIRRGLNSVRRICREFEIHGVFGPIFELLDCDEKFFTAVEVTAGNSLFHVVVETDEVSTQIIRHLNALKGGRVTFIPLNRVKAPHVAYPQSSDVIPLLKKLKFSPNYTPAFAQVFARTVICRDLDVATRVARTDGLDCITLEGDQVSKKGGMTGGFYDYRRSKLKFMNIIRQNSKSINMKEDELEKVRFKLQEIDQKITELVTEQQKIDAKQAHDRSELEQLKQDILNANKQKESIYKALQKKEKLLADVRTQIEQLKASMAMKQAEMGTDLIDHLTPEEKDLLSRLNPEITDLKDQLITCRTDRIEIETRKAELETNLTTNLVRRKLELEAIISSAETDIWSGEAELKRQELKEAKLLVEDLTQRLKRVSENIDERTKQLRKIKDEKNKLKSLEDNYERTLQDEAKELEQLLSKRNLLLAKQEDYSKKIRELGPLSSDAFDTYKRKSIKELHKMLHKCNEQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIERTFKGVARHFREVFSELVQGGHGFLVMMKKKDGDHGDDDHDEDGPREADMEGRVEKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMANTQFITTTFRPELVKVADKIYGVTHKNRVSHVNVVSKEDALDFIEHDQSHNTD* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0784 1216 Gene3D - 605 671 - -
Vvi4g0784 1216 Coils Coil 692 712 - -
Vvi4g0784 1216 Coils Coil 198 228 - -
Vvi4g0784 1216 Gene3D - 16 190 IPR027417 -
Vvi4g0784 1216 Pfam RecF/RecN/SMC N terminal domain 17 1192 IPR003395 -
Vvi4g0784 1216 CDD ABC_SMC3_euk 17 178 IPR041741 GO:0005524|GO:0016887
Vvi4g0784 1216 FunFam Structural maintenance of chromosomes 3 997 1208 - -
Vvi4g0784 1216 SMART SMC_hinge_2 534 646 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi4g0784 1216 FunFam Structural maintenance of chromosomes protein 3 604 671 - -
Vvi4g0784 1216 FunFam Structural maintenance of chromosomes 3 14 209 - -
Vvi4g0784 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 1204 IPR027417 -
Vvi4g0784 1216 SUPERFAMILY Smc hinge domain 478 687 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi4g0784 1216 Gene3D - 997 1208 IPR027417 -
Vvi4g0784 1216 Gene3D - 468 604 - -
Vvi4g0784 1216 Pfam SMC proteins Flexible Hinge Domain 534 645 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi4g0784 1216 Coils Coil 279 313 - -
Vvi4g0784 1216 PIRSF SMC 16 1205 IPR024704 GO:0005524|GO:0016887
Vvi4g0784 1216 Coils Coil 985 1005 - -
Vvi4g0784 1216 Coils Coil 861 937 - -
Vvi4g0784 1216 Coils Coil 488 508 - -
Vvi4g0784 1216 Coils Coil 727 782 - -
Vvi4g0784 1216 Coils Coil 325 355 - -
Vvi4g0784 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 16 1209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0784 Vvi-Chr4 9060650 9111499 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0784 K06669 - vvi:100257283 2282.68