Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0778 ATGTCGTCTGGACCTGCTCCATATGTTCCGAGAAACATTCTTATAACTGGCGCTGCTGGTTTCATCGCTTCCCATGTCACTAATCGTCTGGTCAAGAACCATCCAGACTACAGGATTGTGGCCCTTGACAAGCTTGATTACTGCTCCAATGTCAAGAATCTAGGACCCTCGCGCTCATCCTCAAACTTCAAGTTTGTTAAGGGCGATATTGTGTGTGCTGATCTTGTTAACCATCTCTTGGTTGCGGAGGATATTGACACTATAATGCACTTTGCTGCCCAAACCCATGTGGATAATTCATTTGGGAACTCGTTTGAATTCACTAATAATAATATCTATGGCACCCATGTGCTCCTTGAAGCCTGCAAGGTCACTAAGCGAATCAAGAGATTCATCCATGTCAGTACTGATGAAGTTTATGGGGAGACTGACTTGGATACTGACATTGGAAACCCTGAGGCTTCTCAGCTCCTTCCGACTAATCCTTATTCTGCTACCAAGGCTGGAGCTGAAATGCTGGTCATGGCCTACCACCGCTCTTATGGCCTCCCAACAATCACAACACGAGGGAACAATGTCTATGGCCCCAACCAATTCCCAGAAAAACTTATCCCCAAGTTCATTCTTCTGGCCATGAAAGGGGAGCAGTTGCCTATTCATGGAGATGGATCAAATGTCAGAAGCTATCTGTATTGTGAAGATGTTGCAGAGGCATTTGAAGTAGTGCTGCATAAAGGGGTGATTGGGCATGTGTACAATATCGGCACCAAGAAGGAGAGGAGTGTTCTAGATGTGGCTGAGGACATTTGCAAGCTGTTTCGGTTGGATTCGAAACAGGCTATAAATTTTGTCCATGACAGGCCTTTTAATGACAAGAGATACTTCTTGGATGACCAAAAGCTCAAGAAGCTTGGATGGGAGGAAAGAACTCCATGGGAGGAAGGGCTGAGGAGGACAATGGAGTGGTATACTAAAAACCCTGGCTGGTGGGGTGATGTTAGCGCAGCCCTTCACCCCCACCCTCGAATCTCTATGATAGCTTTTCCCAATGATGACCAGTGTTTCTTGCAGTATGGGTGCGACAAAGACTGCAGTCCTGCAAGTAAAAGTTCAGGTTTGAAGTTCTTGATATATGGGAGGACTGGTTGGATAGGGGGCCTGTTGGGAAAACTTTGCAAGGATGGTGGAATCGAATTCGAGTACGGGAAAGGAAGACTGCAAGATAGGAAAACACTCATGGAGGATATAAGGAGGGTACAGCCGACCCATGTTTTCAATGCTGCCGGTGTGACTGGGAGGCCTAATGTTGACTGGTGCGAATCTCACAAGGTTGAGACCATAAGGACTAATGTGTTGGGTACCTTAACATTGGCAGATGTCTGCAAGGAGCAGGGTCTCTTGATGATGAATTTTGCAACTGGCTGCATATTTGAGTATGATGAGGAGCATCCAGAAGGGTCAGGAGTTGGATTCAAGGAAGAAGATAAGCCCAATTTCGTAGGTTCCTTCTACTCCAAAACCAAGGCCATGGTGGAAGAGCTCCTAAGAGAGTATGAGAATGTATGCACTCTTAGAGTCCGAATGCCAATATCATCAGACCTCAGCAACCCCAGGAACTTCATAACAAAGATCGCTCGATACAACAAAGTGGTTAACATCCCCAACAGCATGACAGTACTAGATGAGCTCCTACCTATATCGATCGAGATGGCCAAGAGGAACTGTCGAGGAATATGGAATTTCACCAACCCAGGGGTAGTGAGCCACAATGAAATCCTAGAGATGTACAGGGATTACATAGACCCTGGATTCGAATGGGTGAACTTCAACTTGGAAGAACAAGCCAAGGTTATAGTTGCACCAAGGAGTAATAATGAGTTGGATGCCTCCAAGCTAAAGAAAGAATTCCCTGAACTCTTGTCAATCAAAGAGTCAATCATCAAGTATGTCTTCGAACCCAACAAGAAAAGTTGA 1974 0.4559 MSSGPAPYVPRNILITGAAGFIASHVTNRLVKNHPDYRIVALDKLDYCSNVKNLGPSRSSSNFKFVKGDIVCADLVNHLLVAEDIDTIMHFAAQTHVDNSFGNSFEFTNNNIYGTHVLLEACKVTKRIKRFIHVSTDEVYGETDLDTDIGNPEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPTITTRGNNVYGPNQFPEKLIPKFILLAMKGEQLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGVIGHVYNIGTKKERSVLDVAEDICKLFRLDSKQAINFVHDRPFNDKRYFLDDQKLKKLGWEERTPWEEGLRRTMEWYTKNPGWWGDVSAALHPHPRISMIAFPNDDQCFLQYGCDKDCSPASKSSGLKFLIYGRTGWIGGLLGKLCKDGGIEFEYGKGRLQDRKTLMEDIRRVQPTHVFNAAGVTGRPNVDWCESHKVETIRTNVLGTLTLADVCKEQGLLMMNFATGCIFEYDEEHPEGSGVGFKEEDKPNFVGSFYSKTKAMVEELLREYENVCTLRVRMPISSDLSNPRNFITKIARYNKVVNIPNSMTVLDELLPISIEMAKRNCRGIWNFTNPGVVSHNEILEMYRDYIDPGFEWVNFNLEEQAKVIVAPRSNNELDASKLKKEFPELLSIKESIIKYVFEPNKKS* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0778 657 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 370 647 IPR036291 -
Vvi4g0778 657 FunFam UDP-glucose 4,6-dehydratase 13 215 - -
Vvi4g0778 657 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Vvi4g0778 657 Gene3D - 365 657 - -
Vvi4g0778 657 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 8 342 - -
Vvi4g0778 657 Gene3D - 204 326 - -
Vvi4g0778 657 CDD dTDP_HR_like_SDR_e 374 646 - -
Vvi4g0778 657 Pfam RmlD substrate binding domain 374 546 IPR029903 -
Vvi4g0778 657 Gene3D - 13 317 - -
Vvi4g0778 657 CDD dTDP_GD_SDR_e 11 327 IPR005888 GO:0008460|GO:0009225
Vvi4g0778 657 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 364 657 - -
Vvi4g0778 657 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 336 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0778 Vvi-Chr4 8940171 8942305 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0778 12 323 Miscellaneous Gene Families AT4G00110 27.003 1.92e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0778 K12450 - vvi:100253745 1349.73