Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0687 ATGGCCATTCTTTGTCCTTCCACTGCCATCTACCATCTTCTCTTCTCTTTTCTTCTTCTGTTTTTCTTATGTTATGTGGGCAATACACCCGTCTGTGGAGATGCCAGAGACGGATATCACACCCTTGATATAAATTCACTGCTGCCTAAGAGCAATTGCACGGCACCAGTCGGAGGAGGGTCTCAAGGGCTACCAATAACATATAGTTATGGACCATGCTCGCAATTAGGCCAGAAGAAGTCTCCCAGTCGTCAGCAAATTTTTCTCCAAGATCGGTCCAGAGTTCGCTCTATTAACGCCAAAATCTTCGGCCAATATTCTACGCAAGAATCCAAAGACGGCTGGTCCCCAGAGTCTATGGACACTTTAAATGAAGATGGCCTTTTTCTTGTCAATGTTGGTTTTGGCACGCCCCAACAAAAATTTAATCTCATAATCGACACAGGCAGTGACACAACTTGGATACAGTGCAACTCATGTTCATTAGGGAATTGCCACAACAAGAAAACTTTTAACCCTTCCTTATCATCCTCTTATTCTAATCGTTCCTGCATCCCCTCTACGGACACGAACTATACCATGAAGTATGAAGATAACTCCTATTCCAAAGGAGTTTTCGTATGTGATGAGGTTACATTGAAGCCCGATGTATTCCCCAAGTTTCAATTTGGTTGCGGAGATAGTGGTGGTGGAGAGTTTGGCACAGCATCTGGGGTACTAGGCCTTGCAAAAGGGGAACAATATTCTCTGATATCTCAGACAGCTTCAAAGTTCAAAAAGAAATTTAGTTACTGTTTCCCACCTAAAGAACACACCCTAGGGTCTTTGTTGTTTGGGGAGAAAGCAATTTCTGCATCTCCCTCGCTGAAATTTACACAGCTTTTGAATCCACCTAGTGGGTTAGGGTATTTTGTTGAACTGATTGGTATAAGTGTTGCCAAAAAGCGATTGAACGTCTCTAGCTCATTGTTTGCATCACCTGGAACTATAATAGATTCTGGAACTGTCATCACTCGTCTTCCTACCGCAGCCTATGAAGCACTCCGCACTGCATTCCAACAGGAAATGTTGCACTGTCCCTCTATTTCTCCGCCGCCACAGGAAAAACTATTGGACACTTGCTATAATCTTAAGGGATGTGGGGGGAGAAACATAAAGTTACCGGAAATAGTACTACATTTTGTGGGAGAAGTGGACGTAAGTTTGCATCCATCAGGAATTCTTTGGGCCAATGGGGACCTAACTCAAGCTTGCTTGGCTTTCGCAAGAAAATCCAATCCTTCTCATGTAACCATCATCGGAAATAGACAACAAGTGTCTCTAAAAGTTGTGTATGACATAGAAGGGGGAAGGTTAGGATTTGGTAACGATTGCAAGCATTGA 1383 0.4331 MAILCPSTAIYHLLFSFLLLFFLCYVGNTPVCGDARDGYHTLDINSLLPKSNCTAPVGGGSQGLPITYSYGPCSQLGQKKSPSRQQIFLQDRSRVRSINAKIFGQYSTQESKDGWSPESMDTLNEDGLFLVNVGFGTPQQKFNLIIDTGSDTTWIQCNSCSLGNCHNKKTFNPSLSSSYSNRSCIPSTDTNYTMKYEDNSYSKGVFVCDEVTLKPDVFPKFQFGCGDSGGGEFGTASGVLGLAKGEQYSLISQTASKFKKKFSYCFPPKEHTLGSLLFGEKAISASPSLKFTQLLNPPSGLGYFVELIGISVAKKRLNVSSSLFASPGTIIDSGTVITRLPTAAYEALRTAFQQEMLHCPSISPPPQEKLLDTCYNLKGCGGRNIKLPEIVLHFVGEVDVSLHPSGILWANGDLTQACLAFARKSNPSHVTIIGNRQQVSLKVVYDIEGGRLGFGNDCKH* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0687 460 PANTHER ASPARTYL PROTEASES 31 453 IPR001461 GO:0004190|GO:0006508
Vvi4g0687 460 FunFam Aspartyl protease AED1 282 459 - -
Vvi4g0687 460 Pfam Xylanase inhibitor C-terminal 303 455 IPR032799 -
Vvi4g0687 460 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 144 155 IPR001969 GO:0004190|GO:0006508
Vvi4g0687 460 ProSiteProfiles Peptidase family A1 domain profile. 129 455 IPR033121 -
Vvi4g0687 460 Pfam Xylanase inhibitor N-terminal 129 279 IPR032861 -
Vvi4g0687 460 Gene3D Acid Proteases 280 460 IPR021109 -
Vvi4g0687 460 SUPERFAMILY Acid proteases 125 456 IPR021109 -
Vvi4g0687 460 PRINTS Pepsin (A1) aspartic protease family signature 135 155 IPR001461 GO:0004190|GO:0006508
Vvi4g0687 460 PRINTS Pepsin (A1) aspartic protease family signature 329 340 IPR001461 GO:0004190|GO:0006508
Vvi4g0687 460 Gene3D Acid Proteases 117 279 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0687 Vvi-Chr4 7315581 7317297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0687 127 458 Miscellaneous Gene Families AT1G77480 25.137 3.55e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0687 - - vvi:100255364 922.539