Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0686 ATGGCCATTCTTTGTCCTTCCACTGCCATCTACCATCTTCTCTTCTCTTCTCTTCTTCTGTTTTTCTCATGTTATGTGAGCGCTATACCCGTCTACGGAGCAGAAGAGGGCAAAGACGGATTTCATTCCACTCCTGTAAGTTCACTGCTGCCAAAGAACAAATGCTCGGCATCTGCCAGAGGAGGATCTCAAGGGCTTCCAATAACACAAAAATATGGGCCATGCTCTGGATCAGGCCACTCCCAACCTCCCAGTCCTCAGGAAATCTTTGGCCGAGATGAATCCAGAGTTAGCTTCATCAACTCCAAATTCAACCAATACGCTCCAGAGAATTTGAAAGATCATACCCCCAATAATAAGCTGTTTGATGAAGATGGCAATTTTCTTGTTGACGTTGCTTTTGGCACACCCCCACAGAAATTTACGTTAATATTGGACACCGGCAGCAGCATAACTTGGACACAGTGCAAACCCTGTGTGCGCTGCTTAAAAGCCTCTCGTCGGCATTTTGACCCATCGGCATCGTTGACTTATTCACTTGGTTCTTGCATTCCAAGTACTGTTGGGAACACCTATAACATGACATATGGCGATAAATCTACCTCTGTAGGAAACTATGGATGCGATACCATGACATTGGAGCATTCTGATGTGTTCCCTAAGTTTCAATTCGGTTGCGGCAGAAATAATGAGGGTGATTTTGGCAGCGGAGCTGATGGGATGCTGGGGCTTGGACAAGGGCAGCTTTCTACCGTATCTCAAACAGCTTCGAAGTTTAAAAAAGTTTTCAGTTACTGTCTCCCTGAGGAAGATTCCATTGGATCGCTGCTGTTCGGAGAGAAAGCCACTTCCCAATCCTCCTCCTTAAAGTTCACATCGCTTGTAAATGGTCCTGGAACCTCAGGGTTAGAGGAGTCAGGGTACTATTTCGTCAAGCTCTTGGATATAAGTGTTGGTAACAAGCGACTTAATATTCCCAGCTCCGTGTTTGCATCACCTGGAACTATAATAGACTCGGGAACTGTCATCACTCGCCTCCCTCAACGAGCCTATTCAGCACTCAAAGCTGCATTCAAGAAAGCAATGGCGAAATATCCTCTTTCCAATGGGAGGCGGAAGAAAGGTGACATATTGGACACATGCTACAATTTAAGTGGAAGGAAAGATGTGTTACTACCGGAGATAGTGCTACATTTTGGGGAAGGAGCCGACGTACGTTTGAATGGAAAGAGAGTTATTTGGGGGAATGATGCATCTCGGCTTTGCTTGGCTTTTGCTGGGAACTCCGAATTAACCATTATTGGAAATAGACAACAAGTGTCTCTAACAGTTCTATATGACATACAAGGAGGAAGGATAGGGTTTGGGGGCAATGGTTGCTCCAAGTGA 1389 0.4543 MAILCPSTAIYHLLFSSLLLFFSCYVSAIPVYGAEEGKDGFHSTPVSSLLPKNKCSASARGGSQGLPITQKYGPCSGSGHSQPPSPQEIFGRDESRVSFINSKFNQYAPENLKDHTPNNKLFDEDGNFLVDVAFGTPPQKFTLILDTGSSITWTQCKPCVRCLKASRRHFDPSASLTYSLGSCIPSTVGNTYNMTYGDKSTSVGNYGCDTMTLEHSDVFPKFQFGCGRNNEGDFGSGADGMLGLGQGQLSTVSQTASKFKKVFSYCLPEEDSIGSLLFGEKATSQSSSLKFTSLVNGPGTSGLEESGYYFVKLLDISVGNKRLNIPSSVFASPGTIIDSGTVITRLPQRAYSALKAAFKKAMAKYPLSNGRRKKGDILDTCYNLSGRKDVLLPEIVLHFGEGADVRLNGKRVIWGNDASRLCLAFAGNSELTIIGNRQQVSLTVLYDIQGGRIGFGGNGCSK* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0686 462 ProSiteProfiles Peptidase family A1 domain profile. 128 456 IPR033121 -
Vvi4g0686 462 Gene3D Acid Proteases 281 462 IPR021109 -
Vvi4g0686 462 FunFam Os06g0119600 protein 106 279 - -
Vvi4g0686 462 FunFam Aspartyl protease AED1 282 461 - -
Vvi4g0686 462 SUPERFAMILY Acid proteases 124 460 IPR021109 -
Vvi4g0686 462 PRINTS Pepsin (A1) aspartic protease family signature 335 346 IPR001461 GO:0004190|GO:0006508
Vvi4g0686 462 PRINTS Pepsin (A1) aspartic protease family signature 134 154 IPR001461 GO:0004190|GO:0006508
Vvi4g0686 462 Pfam Xylanase inhibitor C-terminal 309 455 IPR032799 -
Vvi4g0686 462 Gene3D Acid Proteases 108 280 IPR021109 -
Vvi4g0686 462 PANTHER ASPARTYL PROTEASES 41 454 IPR001461 GO:0004190|GO:0006508
Vvi4g0686 462 Pfam Xylanase inhibitor N-terminal 128 279 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0686 Vvi-Chr4 7278228 7279719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0686 126 462 Miscellaneous Gene Families AT1G77480 26.133 4.73e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0686 - - vvi:100242384 902.894