Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0663 ATGTCCAAACAAAACCCCTCATACACAAACCCTAAACCCTGCAAACACCTTGCAGATTACAAGCTCAGACATGGCTTGAATGGCTTCAAAACCCTCCAAAACTGCCTTAAAACGACCCCATATGGAAGAACAAGTGTGAGCAAACACAAATCAGAGACACCCAGATGCAGTTTGTGTTTTGGGTATCAAGGTAGACTCTATTTCTGCTTGATTTGTTCTTCAATCACATGTTCTAGTCATGCAAATGAGCATTCCCAATCGCACCACGGCCATGAGATTGCTGTGGACGTTGAAAGGGCCGAGCTTTACTGCTGTGTGTGCCGTGATCAGGTGTATGATCCTGATTTTGATAGGGCTGTGGTGAGCAAACACTTCATGGATATGCCCAGCAATGTAAATGGGGTGGAGGGTGTTGTGGAGGAGTCGAATAAGAGGAGGAGATTGGGTTTAGGGTTAGAATTGGAGTGGAAGAGGTCGAAAAGGCTGATTTCGATGGCTGATCGGAGGGCGAAATCAATATTTCCATTGGGTTTGAGGGGATTGAACAATCTGGGAAATACTTGCTTCATGAATTCTGTGTTGCAAGCATTGTTTCATGCTCCACCTCTTAGGAATTACTTCCTAAGTGACCGCCACAACCGCCAATCTTGCCGGAGAAGGTCCTCAGATCGCCTTTGTTTGCCTTGTGACATTGACGTTATCTTCTCAGCCGTGTTTTCCGGTGATCGGACTCCTTACAGTCCTGCTCGGTTTCTTTACAGTTGGTGGCAGCATTCAGAAAATCTAGCTAGTTATGAACAGCAAGATGCTCATGAGTTCTTCATTTCAATGCTTGATCAAATCCATGTGAAAGAAGGAAAATCAGGAAACCAAGATAAAGATAACAGAGATTGCCAGTGTATTGCTCATAAAGCGTTCTCTGGGCTGTTGAGATCAGATGTCACTTGTACAACCTGCGGATTTACTTCGACAACCTATGACCCATGTGTGGACATTTCTCTTAACTTGGACATGAGCTTTTGCCCTTCAACAGGCATGACCAACAGGACCACCAAGCCAAATGAGAATGCAATTATATCTACTCTCTTGGGCTGCTTGGACCTCTTCACAAGACCAGAGAAGTTGGGTCCAGACCAGAAATTGTACTGCCAAAACTGTCAAGAAAGGCGAAACTCATTGAAGCAAATGTCCATCAGAAGGCTCCCAATAGTACTATGTCTACATATAAAGCGATTTGAGCACTCAACAATCAGAAAAATGTCACGGAAAATTGACCAATATCTGCAGTTCCCCTTCTCCTTGGACATGACTCCATACTTATCCTCCTCCATTGTCAGGAACAGGGATGCTAGAATCTGGGCATTATGTGACTTACGTCCGTGTAAGAAATCGATGGTACAAATGTGA 1407 0.4435 MSKQNPSYTNPKPCKHLADYKLRHGLNGFKTLQNCLKTTPYGRTSVSKHKSETPRCSLCFGYQGRLYFCLICSSITCSSHANEHSQSHHGHEIAVDVERAELYCCVCRDQVYDPDFDRAVVSKHFMDMPSNVNGVEGVVEESNKRRRLGLGLELEWKRSKRLISMADRRAKSIFPLGLRGLNNLGNTCFMNSVLQALFHAPPLRNYFLSDRHNRQSCRRRSSDRLCLPCDIDVIFSAVFSGDRTPYSPARFLYSWWQHSENLASYEQQDAHEFFISMLDQIHVKEGKSGNQDKDNRDCQCIAHKAFSGLLRSDVTCTTCGFTSTTYDPCVDISLNLDMSFCPSTGMTNRTTKPNENAIISTLLGCLDLFTRPEKLGPDQKLYCQNCQERRNSLKQMSIRRLPIVLCLHIKRFEHSTIRKMSRKIDQYLQFPFSLDMTPYLSSSIVRNRDARIWALCDLRPCKKSMVQM* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0663 468 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 64 440 - -
Vvi4g0663 468 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 179 468 IPR028889 -
Vvi4g0663 468 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Vvi4g0663 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 131 IPR013083 -
Vvi4g0663 468 FunFam Ubiquitinyl hydrolase 1 8 129 - -
Vvi4g0663 468 Pfam Ubiquitin carboxyl-terminal hydrolase 179 443 IPR001394 GO:0004843|GO:0016579
Vvi4g0663 468 ProSiteProfiles Zinc finger UBP-type profile. 12 129 IPR001607 GO:0008270
Vvi4g0663 468 Gene3D Cysteine proteinases 175 457 - -
Vvi4g0663 468 SUPERFAMILY RING/U-box 12 118 - -
Vvi4g0663 468 SUPERFAMILY Cysteine proteinases 175 446 IPR038765 -
Vvi4g0663 468 SMART Zf_UBP_1 55 102 IPR001607 GO:0008270
Vvi4g0663 468 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 180 195 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0663 Vvi-Chr4 6893924 6896204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0663 180 441 Miscellaneous Gene Families AT4G31670 28.302 2.05e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0663 K11366 - vvi:100255882 890.182