Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0655 ATGGCTCTTTTCCATTGCAGCTTCCTTTATTCATTGTCCTCGGTTGACTCAGGACTGCAAAGATGGAATAAGGTTATAAAGAGGCGAGTAAGCCAGGGTAATCCAGATCAAGCCATTCTTGCTTATGTCGAAATGAAACGAGTTGGGTTTGATGCTGATAATTTTACATTTCCTGTTTTACTCAAAGCAGCTTCAAGTCTTTCTTCTTGTTGTATTGGTTTTGCTCTCCATGGCCAGGCCATGAAAACCGGTTTTTCTGGCCATTGTTTTGTGGGGACGGCTCTGTTGGACATGTACTCGGCCTTTGGGGCCATTGATCATGCCACTAAGGTGTTTGAGGAGATGGGTGTGAAAGATGTAGTTGTTTGGAATTCCATGTTAGCTGCATATGCTTCTTGTGGTCAGATGGATAATGCCATGAAACTGTTTGATAATATGCCTCTGAAGGACCTTGCATCTTTTAATATCATGATTTCTGGGTATGCAAAAATAGGAAAAAAAGCGGCTGCCAGAAGCATCTTTGATAGAATTCATGCTAAGGACATCGTGTCATGGAACTCGATGATTCTGGCATGTACCAATGTTGGCGATATGGGTAATGCCCGGAACTTGTTTGATGTAATGCCTAAGAAAAACGTCATTACATGGAACACAATGATTTCTGGCTACTTACATGCCCAACTTTATGCTGAGGCTGTTGATTTATTTGATGAGATGAAAGCCGGAAACCATGAGGCTGACCATCTGACCGTTACTCTCGTTCTATCTGCTTGTGCCCATTTAGGGTGGCTGGGAAAAGGCACTGAGATGCACGTATATGCTCAAGATCATCGGCTGGCATCAAGTCCCCATGTAGCCACATCATTAATCGATATGTATGCAAAGTGTGGAACCATACAGAGGTCACTAGAGGTGTTCTATAAGTCTCAAGTAAAGGATATTTATTGTTGGAATGCCATCATCTCCGGACTCGCTCTTCATGGCTATGGTCATGCTGCTGTCAAACTCTTAGACAAAATGCGGGATAATGGTGTAAGGCCTGATGAAATCACCTTCATTGGACTTCTCAGTGCATGTAGTCATCGTAGCTTGGTCCAAGAGGGTTGCCGGTTGTTCGATTGCATGGAAAAGGAGTTTGGCCTTCCACCCAAGTTAGAGCATTATGGCTGCATGGTTGATCTTCTGGGTAGAGCTGGATTTCTTGACCCTGCATTTCAGCTCATAAAAGCCATGCCTTTTGAACCCGGAGAAAGCATCTTGGGTGCCTTGCTTGGTGCCTGTGTGATTCATCAGGATCTTGAGACTGGAGAGAAGGTGATAAACTTGATTACTTCCAAGGCTCATCATGTGAGTGATGGAGAGTTTATGATGTTTGTGAACTTGTATGCATCATGTGGCCAATGGAAAGAAGCCAATAGATGGAGGGAGAGGATGAACGAATCGGGGATTGCTAAAACTGCTGGGGGTAGTACCATTGAAGTCGATGGCAAATTTTACAGGTTTTTGGCTGGGGATATCAGCATGGATCAAGATTTGCATAGTGGGTCAAATTAA 1554 0.4376 MALFHCSFLYSLSSVDSGLQRWNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETGEKVINLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIEVDGKFYRFLAGDISMDQDLHSGSN* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0655 517 FunFam Pentatricopeptide repeat-containing protein At2g20540 28 174 - -
Vvi4g0655 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Vvi4g0655 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Vvi4g0655 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vvi4g0655 517 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 510 IPR046960 GO:0003723|GO:0009451
Vvi4g0655 517 Pfam PPR repeat family 312 360 IPR002885 -
Vvi4g0655 517 Pfam PPR repeat family 211 259 IPR002885 -
Vvi4g0655 517 Gene3D Tetratricopeptide repeat domain 20 182 IPR011990 GO:0005515
Vvi4g0655 517 Gene3D Tetratricopeptide repeat domain 283 497 IPR011990 GO:0005515
Vvi4g0655 517 NCBIfam pentatricopeptide repeat 214 247 IPR002885 -
Vvi4g0655 517 NCBIfam pentatricopeptide repeat 121 147 IPR002885 -
Vvi4g0655 517 NCBIfam pentatricopeptide repeat 315 349 IPR002885 -
Vvi4g0655 517 NCBIfam pentatricopeptide repeat 153 183 IPR002885 -
Vvi4g0655 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 211 IPR002885 -
Vvi4g0655 517 FunFam Pentatricopeptide repeat-containing protein At1g31430 287 497 - -
Vvi4g0655 517 Pfam E motif 430 493 IPR046848 -
Vvi4g0655 517 Gene3D Tetratricopeptide repeat domain 208 275 IPR011990 GO:0005515
Vvi4g0655 517 Pfam PPR repeat 93 118 IPR002885 -
Vvi4g0655 517 Pfam PPR repeat 287 308 IPR002885 -
Vvi4g0655 517 Pfam PPR repeat 153 180 IPR002885 -
Vvi4g0655 517 Pfam PPR repeat 121 148 IPR002885 -
Vvi4g0655 517 Pfam PPR repeat 387 411 IPR002885 -
Vvi4g0655 517 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 208 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0655 Vvi-Chr4 6766825 6768378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0655 22 507 Glycoside Hydrolase AT3G49170 30.952 9.51e-81 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0655 - - vvi:100249287 1045.03