Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0650 ATGGATGTGATAATACTCTCCTCTTCAAGTAGTTGTTGTAGTAAGTTCAAGTATGGTTGTGCTGTAACTGGGACTAAACCCTCCGTTTTGAGCTGTAATGAGTCGTTAGGGGGAATCAAAATTGGGAATTTGAAGGTTTTGCCATCTGGGTGTAGGGTGAATTGGAAGAAACACAGGAAAAAACAAGTGGGTGTTTGTGGGTTTGTGATTAGAAGCTCATTTGATGTGGTGGTCGTGAAAAGGAAGCCGGAAAGTACTATGTCTTCTGAGGAAGTTTATAGGGTTTTAAAGTCGATTTCAGACCCGAACCAGGCCTTTTCTTTCTTTAATTCTGTGGCGGAAATGCCCAGAGTCATTCACACCACAGAGACATGCAATTACGTGCTTGAAATGTTGAGGGCTCATAGGAGGGTGGAGGATATGGTGGTTGTGTTTAATTTGATGCAAAAGCAAATCATAAAGAGGAGTATAAACACTTACTTGACTATTTTTAAGGTTCTTTATATAAGGGGAGGGCTTCGGGAAGCCCCAGTTGCGCTTGAAAAGATGAGAAAAGTGGGGTTTGTTTTGAACGGGTATTCGTATATTGGGTTGATCCATTTGCTTCTTAAATCTGGTTTTTGTAGGGAGGCTTTGAAGGTGTATAGAAGAATGGTGTCTGAAGGGATTAAGCCTAGTCTCAAGACTTACTCTGCACTTATGGTAGCACTGGGAAAGAGAAGGGATATTGAAACCGTCATGGGTTTGTTACAAGAGATGGAAAGCTTGGGATTGAGGCCTAATATTTACACATTTACCATATGCATTAGAATATTGGGGAGGGCAGGAAAAATTGATGAGGCTTATGGGATTTTGAAAAGGATGGATGATGCAGGATGTGGTCCTGATGTTGTTACTTATACAGTTCTCATTGATGCTCTTTGTAATGCTGGGAAGCTTAATAATGCAAAGGAATTATTTCTAAAGATGAAAGCAAGCAGCCATAAACCTGATCGAGTAACTTACATAACTTTATTGGACAAGTTTAGTGACCATGGAGACTTGGATGCCATAAAAGAATTTTGGAGTGAAATGGAAGCTGATGGTTATCTTCCTGATGTGGTTACCTTCACCATACTTATCGATGCTTTATGCAAAGTGGGGAAAGTTGATGAAGCATTTGGTACATTGGATGTCATGAAAAAGCAAGGGGTGGCACCAAATCTTCATACGTACAATACTTTGATTTGTGGGCTTTTGAGACTAAATAGATTAGATGAAGCATTAGAACTTTTCAACAGTATGGAATCTCTTGGTCTTGAAACTACTGCTTACACTTACATCCTTTTCATTGACTACTATGGAAAGTCAGGAGAATCCGGCAAAGCTATCAAGACATTTGAGAAGATGAAAACTAATGGAATTGTTCCTAATATTGTTGCTTGTAATGCATCTTTATATAGTCTTGCAGAACAAGGGAGGCTTGAAGAGGCAAAAGAGTTCTTTAATGGACTTAAAAAATGTGGGCTTGCTCCAGATGCTATAACCTATAATATTCTGATGAGATGCTATGGTAAGGCTGGGAGAGTTGATGATGCCATTAAGTTGCTCTCAGAGATGGAGGAAAATGGGTGTGATCCTGAAGTTGTTATTATCAATTCTCTGATTGACACACTTTACAAGGCCGATCGGGTAGATGAGGCATGGAAAATGTTTCAAAGAATGAAGGAAATGAAGCTTGCCCCTACAGTTGTGACTTACAATACGTTACTAGCTGGTTTGGGAAAAGAGGGAAGAGTCCAAGAGGCCACTGCGCTATTCAAGGGTATGATTGCAGATGATTGTCCTCCAAATACAATATCTTTCAACACACTTCTAGACTGCCTTTGCAAGAATGGTGAGGTTGATTTGGCCTTGAAGATGCTATTTAGAATGACAGAAATGAATTGTTTTCCAGATGTTTTAACATACAACACTGTCATTTATGGCTTGATTAAAGAAAACAGAGTTAATTATGCATTCTGGTTATTCCATCAGATGAAGAAAGTGATTTATCCTGATTATGTAACTTTGTGCACCCTCCTTCCTGGTGTCATAAAAGATGGGCGAATTGAGGATGCTTTTAGGGTTGCCAAGGAATTTGTTCATCATGTTGGAGATCATGCAGATGGGTCTTTTTGGGAAGATTTAATGGGAGGGATTTTGATAGAAGCTGAAATAGGCCAGTCTATATTATTCGCTGAAAGTTTAGTATGTAATACGATTTGTGAGGATGACTCAGTATTGATACCATTAGTTAAGTTTTTGTGCAAACATGGGAAAGCTGTTGATGCCTACAATGTGTTCCTGAAACTTACCAAAAGTTTTTGTATTACACCATCGCTAGAAGCATATAATTCTCTAATTGATGGACTCCTCAAAGCCCGGCTCACTGAAATGGCTTGGGGTCTTTTTTATAAGATGAAGAATGCTGGCTGTACACCTGATGTTTTCACCTACAACCTGTTCCTTGATGCCCTTGGGAAGTCTGGAAAGATCAAAGAACTTTTTGATTTGTATGAAGAGATGCTCTTTAGGGGCTGCAAACCTAACACAATAACTCATAACATAGTCATCTTCGGTCTTGTGAAATCTAATAGCTTAGATAAGGCTATAGATTTATACTATGATCTTATGAGTGGAGATTTCTCCCCAACTCCTTGGACATATGGCCCTCTTATTGATGGCCTTTTGAAGTTAGGAAGACTGGAGGAAGCGAAGCAGTTCTTTGAGGAGATGCTGGATTATGGATGCATGCCTAACTGTCCGCTTTACAATATTCTTATGAATGGATTTGGGAAACAGGGTGATGTGGAAACTGCTTGTGAGTTGTTTAGAAGGATGGTTAAAGAGGGAATAAGACCAGATTTGAAATCCTACAGCATTATGGTGGATTGCCTTTGCATGGTGGGGAAAGTTGATGATGCTCTGCACTACTTTGAGGAACTAAAGCTTTCTGGCCTGGATCCTGATTTGGTTTGTTATAACCTTATGATCAATGGTCTTGGAAGATCACAGAGGGTGGAGGAAGCTCTTTCTCTTTTTGATGAGATGCGGAATAGAGGGATTACTCCTGATCTTTACACCTACAATGCCTTAATACTCAATCTTGGGATTGCTGGAATGGTAGAGGAAGCGGGAAAGATGTATGAGGAACTCCAACTTAAAGGCCTTGAACCTAATGTGTTTACTTATAATGCTCTCATTCGCGGGCATAGCATGTCAGGTAACCCTGACCGTGCATATGCAGTCTACAAGAAGATGATGGTTGGGGGCTGCAGACCCAATACAGGAACATTTGCGCAACTTCCTAATCAATCTTGA 3342 0.3998 MDVIILSSSSSCCSKFKYGCAVTGTKPSVLSCNESLGGIKIGNLKVLPSGCRVNWKKHRKKQVGVCGFVIRSSFDVVVVKRKPESTMSSEEVYRVLKSISDPNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPNQS* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 578 612 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 999 1032 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 508 540 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 824 858 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 613 647 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 895 928 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 544 576 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 368 401 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 649 675 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 859 892 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 193 226 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 965 997 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 229 262 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 403 434 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 1034 1068 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 298 331 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 790 823 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 438 472 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 333 367 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 474 507 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 263 297 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 1069 1103 IPR002885 -
Vvi4g0650 1113 NCBIfam pentatricopeptide repeat 931 962 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 996 1040 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 575 624 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 821 870 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 931 974 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 295 342 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 1066 1106 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 365 412 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat family 645 691 IPR002885 -
Vvi4g0650 1113 SUPERFAMILY TPR-like 400 997 IPR011990 GO:0005515
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 626 736 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 236 350 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 75 235 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 536 625 IPR011990 GO:0005515
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 927 961 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi4g0650 1113 SUPERFAMILY HCP-like 876 1094 - -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 822 856 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 997 1031 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 676 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 852 920 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 746 851 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 921 990 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 1061 1110 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 351 431 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 991 1060 IPR011990 GO:0005515
Vvi4g0650 1113 Gene3D Tetratricopeptide repeat domain 432 535 IPR011990 GO:0005515
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1067 1101 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat 790 819 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat 546 572 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat 263 293 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat 895 924 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
Vvi4g0650 1113 Pfam PPR repeat 502 534 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi4g0650 1113 PANTHER ATPASE EXPRESSION PROTEIN 3 256 601 - -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 892 926 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 962 996 IPR002885 -
Vvi4g0650 1113 Pfam Pentatricopeptide repeat domain 424 477 IPR002885 -
Vvi4g0650 1113 Pfam Pentatricopeptide repeat domain 180 240 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1032 1066 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 787 821 IPR002885 -
Vvi4g0650 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 857 891 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0650 198 703 Glycosyltransferase AT1G05670 28.543 1.50e-65 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0650 - - vvi:100247529 2238.77