Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0644 ATGAAGTTTATGAAGCTGGGTTCGAAGCCTGATGCCTTTCAAGCTGATGGCAATTCTGTCAGGTATGTTTCATCCGAATTGGCAACTGATGTTATCATAATTGTTGGAGGAGTGAAGTTTTACCTTCACAAGTTCCCTCTCTTGTCCAAGAGCAATCGCCTGCAAAAGTTGGTAGTGAAAGCCAGTGAGGAAAATTCTGATGAAATTCGACTGGTTGATTTTCCTGGTGGGCCGAAAGCCTTTGAAATTTGCGCCAAATTTTGCTATGGGATGACTGTAACACTAAATGCTTACAATGTTGTGGCTGCCCGTTGCGCAGCTGAGTACCTTGAGATGACTGAGGATGTTGATAGAGGCAACCTAATTTTCAAAATTGAAGTGTTTCTGAACTCCAGTGTCTTCCGAAGCTGGAAAGATTCTATTATTGTTCTTCAAACGACCAAATCTCTGTTACCATGGTCTGAAGATCTAAAGGTGATTGGAAGATGCATAGATTCCATTGCATCTAAAACTTCCGTGGACCCGGCTAACATCAGCTGGTCTTACACTTACAATCGAAAATTAGCAGTGCCAGATAAAATTATTGAGGATGGGATGAAGCTCCAAGAGAGAATCGAGTCTGTTCCAAAGGATTGGTGGGTTGAAGATATCTGTGAGTTGGAGATTGATCTCTATAAACGAGTTATGATTGCTGTGAAATCAAAGGGAAGAATGGATGCAAATGTGATTGGAGAGGCACTAAAGACTTATGCAGTTAGATGGTTGCCTGATTCCCTTGACGCCCTGGTTTCTGATGATCATACCAGGAGGAACAAATCTTTGGTGGAAACAATCATTTGCTTATTGCCATCTGATAAGGGTGTGGGTTGTTCTTGCAGTTTTTTGCTCAAATTATTGAAAGTTGCTATTCTAGTTGGAGCAGATGATTCACAAAGGGAAGAATTGGTAAAAAGGATCAGTCTGAAGTTGGATGAGGCTTCTGTCAATGATCTATTGATCCGAGCTCGATCTCCGCAAACAACTGTTTATGATGTTGAACTGGTGCAGTCCATTGTGAATAGATTTGTGTTGCATGAAAAGCGTTGCCAGGATTTGGATATTTCTGAGAAGAATGAGAAGGGAACCAGTGATTTTATACTGGGCCATGGACCTTTGTTAAAAGTCGGTAAACTGATGGATGGATATCTTGCTGAAATTGCTCATGATCCAAATCTCACCCTCTCCAGTTTCAATGATATTGTACGGTCAACTCCCGAATCAGCAAGACCAATTCATGATGGCTTATACAAGGCTATTGACATCTACCTGAAGGCACACCAGAACTTGACAAAAGCTGAAAGAAAGAAGCTTTGTGGGCTGATGGATGTCAAGAAACTTACAATGGATGCATCCATGCATGCAGCTCAGAACGATCGTCTCCCACTCCGGGTTGTAGTCCAAGTCCTCTTTTTTGAGCAGGTTAGAGCAGCTGCTGGGGCTCAAGCCCCTAACAGTATTCCCCGTGATACCTCACAAGCCATGACCAACATGGATGAAGAATGGGAGAAGCCAGCAATAGTACGAGGTCCAGAGAGTTGCAAATCCCTGAGGAGACAGATGAATCAAATGAAGATAAAAGATGAGGAATTTCGGAAAAACGGGAAATTGACTAAAAAGGGTAGCAAAAACAGCAGAAGTGGTGTGCAGCTGCTGCCTTCTAGATCAAGGAGAATGTTTGACAAGTTATGGGCAGTGGGTAAAAAGCATGGAGAGAACAGAAGCTCTGAGACCTCAGGGAGTTCCCAGAGCCCAACTTCAGTGGCACCTGGGGAGACAAAGTCATCCGGTTCATCTTCAAGACAGAGGAGGCATTCCATCTCTTAG 1863 0.4316 MKFMKLGSKPDAFQADGNSVRYVSSELATDVIIIVGGVKFYLHKFPLLSKSNRLQKLVVKASEENSDEIRLVDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLEMTEDVDRGNLIFKIEVFLNSSVFRSWKDSIIVLQTTKSLLPWSEDLKVIGRCIDSIASKTSVDPANISWSYTYNRKLAVPDKIIEDGMKLQERIESVPKDWWVEDICELEIDLYKRVMIAVKSKGRMDANVIGEALKTYAVRWLPDSLDALVSDDHTRRNKSLVETIICLLPSDKGVGCSCSFLLKLLKVAILVGADDSQREELVKRISLKLDEASVNDLLIRARSPQTTVYDVELVQSIVNRFVLHEKRCQDLDISEKNEKGTSDFILGHGPLLKVGKLMDGYLAEIAHDPNLTLSSFNDIVRSTPESARPIHDGLYKAIDIYLKAHQNLTKAERKKLCGLMDVKKLTMDASMHAAQNDRLPLRVVVQVLFFEQVRAAAGAQAPNSIPRDTSQAMTNMDEEWEKPAIVRGPESCKSLRRQMNQMKIKDEEFRKNGKLTKKGSKNSRSGVQLLPSRSRRMFDKLWAVGKKHGENRSSETSGSSQSPTSVAPGETKSSGSSSRQRRHSIS* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0644 620 Gene3D Potassium Channel Kv1.1; Chain A 12 119 IPR011333 -
Vvi4g0644 620 MobiDBLite consensus disorder prediction 535 549 - -
Vvi4g0644 620 MobiDBLite consensus disorder prediction 535 620 - -
Vvi4g0644 620 Pfam BTB/POZ domain 25 114 IPR000210 GO:0005515
Vvi4g0644 620 SUPERFAMILY POZ domain 21 116 IPR011333 -
Vvi4g0644 620 CDD BTB_POZ_NPY3-like 20 124 - -
Vvi4g0644 620 PANTHER OS12G0117600 PROTEIN 24 584 IPR043454 -
Vvi4g0644 620 MobiDBLite consensus disorder prediction 588 620 - -
Vvi4g0644 620 Coils Coil 526 546 - -
Vvi4g0644 620 Pfam NPH3 family 211 464 IPR027356 -
Vvi4g0644 620 SMART BTB_4 29 127 IPR000210 GO:0005515
Vvi4g0644 620 ProSiteProfiles NPH3 domain profile. 211 488 IPR027356 -
Vvi4g0644 620 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Vvi4g0644 620 MobiDBLite consensus disorder prediction 573 587 - -
Vvi4g0644 620 FunFam BTB/POZ domain-containing protein NPY2 17 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0644 Vvi-Chr4 6609135 6615287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0644 8 508 EF-hand Containing Proteins AT3G44820 35.688 5.53e-104 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0644 - - vvi:100264499 1187.94