Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0643 ATGAGAAAGATGAGAAAGTTCACAACCCTAAAATCTGTATTCATTGTGTTGTTGGTAATCCAAGCTCTTGGTGTTAACGCCAAGTCGTCTTCTCAATGCAAAGCATGGATTGTCCAGTCAATCCCCACCCACATGCCCCACCTTCCTCCTGTCTCTGGCGTTCTCTCTACTGCTGATGTGTTCCAGTGGTTGGCTGGAAACTCTTCCTTGAGCCTGGATATAATAGCTCAATACTGGCAACTAAATGCCCATCCTGATGATCCCCTTTCCGGGGATTATGGATACTCAAAAGCTGATATGCATAAGTTTGGTGCTCATGAAGGTTTTGATGTCTATAGAGCCCTAGAAAATGCTGCTGATCGTAATATTAGTATCAGGCTTTTACAGCACTCAGGAGTATATCCTGATTATACCAAAGAACCATCTGACCTTGCATCAGGAAGGCCAAATGTGGAGAATGTGACTTTATTGCTTGGAGAATGGTGGGGTTCAGGCATAGTCCATGCTAAAGTTTGGATATCAGACAGTCGAGATGTCTATATCGGATCTGCAAACAATGATTGGAAATCTCTCACGCAGGTGAAGGAAGTTGGAATTTATCTTGTTGATTGCCCAAGTATAGCAAGACAGGTTGAGATCTACTATAACAATCTATGGAAACTTGCCTCTCTTAATGTTTCAGCTTACACAACAACAGTATGGGATCAACAGTGGCAGATCAATAGACAAGTTCCTTGCTGGTCACATTTTCTTACTCCCAGAGAGAGGTGCAGGTCGCCTCTACCTCGTTATGTGGCAGTTCCCCATGTGGTCGGGTATCCAACACTGTCAGACCCTCGTATGTTTAAAACACCAATTCAAACTCCTGGACACAACTGTTCCACTTCAAAACCTCAATCTAGCTGTCTGTCTTTTGCTCCTCCAGAGTTGTCATTTGGCAAGCACCAGGCCGATGAACAGGCATGGGTGGATACAATTAAATCTGTAGGAACTGGGGCAACTGTTAGAATTAATAGCATGGACTGGCTAGGTCAATCTCAGTACATGCAACAAACAGTTTATTGGTCATCCCTTTCATCTGCAGTATCAGAGGTTGTCTTCTCCAAGCACGCTAAGGTCAAGATTCTAGTAGCATATTGGGCTCATTTTATTAACAACACAGATCAGTATCTGAAGTCTCTCCTCTACTCCAATGTCCTCTGCTATTCTTCAAAGTACAACAAATGTTCAGGCAAAGTTGAGATCAAGTACTACAAGGTGCCGGGCTTCAACTTGACAGGGCCTGCCATTCACAATGGGACTAGTACAGGAAACATCTACCCAGGCTTTACCAGGGTTAACCATGGCAAATATGCAGTCAGTGACGTTAGAGCCCACATCGGGACGAGCAACCTGGTATGGGATTACTTCTATTCAACTGCAGGTGTCAGCTTCGGAACATATAACCCTGCCATTGTTTCTCAACTGCAAGAAATCTTTGATGCTGACTGGAATTCACCATATGCAGTTCCAGTTGAACCTCTGGAGGAAGGTCAATTTCATTCAAGCAGATGA 1554 0.4395 MRKMRKFTTLKSVFIVLLVIQALGVNAKSSSQCKAWIVQSIPTHMPHLPPVSGVLSTADVFQWLAGNSSLSLDIIAQYWQLNAHPDDPLSGDYGYSKADMHKFGAHEGFDVYRALENAADRNISIRLLQHSGVYPDYTKEPSDLASGRPNVENVTLLLGEWWGSGIVHAKVWISDSRDVYIGSANNDWKSLTQVKEVGIYLVDCPSIARQVEIYYNNLWKLASLNVSAYTTTVWDQQWQINRQVPCWSHFLTPRERCRSPLPRYVAVPHVVGYPTLSDPRMFKTPIQTPGHNCSTSKPQSSCLSFAPPELSFGKHQADEQAWVDTIKSVGTGATVRINSMDWLGQSQYMQQTVYWSSLSSAVSEVVFSKHAKVKILVAYWAHFINNTDQYLKSLLYSNVLCYSSKYNKCSGKVEIKYYKVPGFNLTGPAIHNGTSTGNIYPGFTRVNHGKYAVSDVRAHIGTSNLVWDYFYSTAGVSFGTYNPAIVSQLQEIFDADWNSPYAVPVEPLEEGQFHSSR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0643 517 Pfam PLD-like domain 110 219 IPR025202 -
Vvi4g0643 517 CDD PLDc_vPLD3_4_5_like_1 37 204 - -
Vvi4g0643 517 CDD PLDc_vPLD3_4_5_like_2 303 498 - -
Vvi4g0643 517 SUPERFAMILY Phospholipase D/nuclease 108 221 - -
Vvi4g0643 517 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 163 190 IPR001736 GO:0003824
Vvi4g0643 517 SMART pld_4 163 190 IPR001736 GO:0003824
Vvi4g0643 517 SMART pld_4 443 469 IPR001736 GO:0003824
Vvi4g0643 517 SUPERFAMILY Phospholipase D/nuclease 369 508 - -
Vvi4g0643 517 PANTHER PHOSPHOLIPASE D - RELATED 28 511 - -
Vvi4g0643 517 Gene3D Endonuclease Chain A 294 500 - -
Vvi4g0643 517 Gene3D Endonuclease Chain A 63 223 - -
Vvi4g0643 517 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 443 469 IPR001736 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0643 K16860 - vvi:100242220 1075.85