Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0642 ATGCAAAGAGCTAAAGCAGTGTTGTCACCAGCAGTGAGGTGTTCCCTACAGAGATTTGGGGTTTTCTCTCATCACAGAAGCTTCTCTGCTCTGCCAAATTATGCCCGAAACGATGATCTCCAAGAGCAGGTGTTAGTGGAAGGGAGGGCAAAGTCAAGGGCAGCCATTCTCAATAGACCATCTGATCTCAATGCTCTCACTATTCCAATGGTGGCCCGGCTCAAAAGACTATATGAATCATGGGAAGAAAACTCAGATCTTGGATTTGTCATAATGAAGGGTAGTGGCAGGGCCTTATGTTCTGGTGGAGATGTTGTTGCTCTCAATCAGCTGATTAATGAAGGGAAAGTTGAGGAGTGTAAAAAGTTTTTTGAGACTTTGTATAAGTTCGTATACCTTCTAGGAACGTATGTGAAGCCAAATGTGGCTATCGTGGATGGTATTACCATGGGAGGTGGCGCTGGAATTTCCATCCCGGCAATGTTTCGTGTGGTAACTGATAAAACGGTTTTTGCCACTCCAGAGACTCAAATGGGATTCCATCCTGATGCTGGTGCTTCATTCTATCTTTCTCGTCTACCAGGATATTTAGGGGAATACTTGGCTCTAACAGGAGAAAAGCTCAATGGTGTAGAAATGATTGCCTGTGGCCTTGCTACACACTACTCACTGACTGCAAGACTTCCCTTGATTGAAGAACGTCTTGGTAAATTGATCACGGATGATCCTTCTGTCATAGAGTCTTCTCTTGAGCAATATGGTGACCTTGTCTACCCAGATAAGAGGAGTGTTCTTCATAAGATTGAGACAATTGATAAATGTTTCTGCCATGATACGGTTGAGGAAATTATTAATGCCTTGGAAAATGAGGCATCCAGTTCATATGATGAATGGTCTGCCACAGCCCTCAAGAAACTGAAAGAAGCCTCCCCATTGAGCTTAAAGGTTACTTTACGATCTATACGAGAAGGTAGATTTCAACCTCTTGATCAGTGTCTGGCTCGAGAATATCGCATATCTCTTGTTGGGATCACCAAATGGGTCTCTGATGATTTCTGTGAGGGTGTTCGAGCACGGTTCGTGGACAAGGACTTTGCTCCAAAGTGGGATCCTCCAAGTCTGGGAGAAGTAACCAAAGACATGGTTGATTGCTATTTCACCCGACTCGATGAATTCGAGCCTGAACTAGAGCTACCAACGGCATTGCGAGAGCCTTACATGTGA 1224 0.4436 MQRAKAVLSPAVRCSLQRFGVFSHHRSFSALPNYARNDDLQEQVLVEGRAKSRAAILNRPSDLNALTIPMVARLKRLYESWEENSDLGFVIMKGSGRALCSGGDVVALNQLINEGKVEECKKFFETLYKFVYLLGTYVKPNVAIVDGITMGGGAGISIPAMFRVVTDKTVFATPETQMGFHPDAGASFYLSRLPGYLGEYLALTGEKLNGVEMIACGLATHYSLTARLPLIEERLGKLITDDPSVIESSLEQYGDLVYPDKRSVLHKIETIDKCFCHDTVEEIINALENEASSSYDEWSATALKKLKEASPLSLKVTLRSIREGRFQPLDQCLAREYRISLVGITKWVSDDFCEGVRARFVDKDFAPKWDPPSLGEVTKDMVDCYFTRLDEFEPELELPTALREPYM* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0642 407 Gene3D - 38 402 - -
Vvi4g0642 407 CDD crotonase-like 57 221 - -
Vvi4g0642 407 Pfam Enoyl-CoA hydratase/isomerase 54 386 IPR045004 -
Vvi4g0642 407 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 40 401 IPR032259 GO:0003860
Vvi4g0642 407 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 38 402 - -
Vvi4g0642 407 SUPERFAMILY ClpP/crotonase 54 372 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0642 Vvi-Chr4 6578829 6598678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0642 1 407 Acyl Lipid Metabolism Gene Families AT4G31810 71.046 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0642 K05605 - vvi:100257773 816.994