Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0639 ATGGGGGCATCTGATGCCAAGGGAGATTTGGGCATGAGCAGTAGTATGGGTGAAAAGCTTTCAAACGGAGTCCAAATGGAAATAGATGATGATCTGATGGGCTCAATCGAGATAGACGACTTAAACAAAGAATATTTGAAAACATTTTGCAAAAAGGTTGCGGTATCATTCTTTAATGAGTATGGACTCATTCAGCATCAGATCAACTCCTTCAACGACTTCATCAAAAATGGAATTCAAAGGGTTTTTGATTCTTTTGGCGAGATCCCTGTGGAGCCTGGGTATGACCCATCTAAGAGGGGAGAGGGTGATTGGAGATACGCTTCTGTGAGGTTCGGGAAGGTCACCCTTGAACGGCCGAGGGTATGGGCTGGTGAATCAGATGGTAAGGAGTCCCTGAATTTTTTGCCGAGACATGCACGTCTTCAGAACATGACGTACTCATCTCGGATGAAAGCTCAAGTTCATTTCCAGGTATATACTCAGAAACTTGTAAGAAGTGACAAGTACAAAACTGGAAAAGACAACAAGTATGTTGAGAAGAAGGTTATATTCGAAGATAACAGGGACATATTAATTGGGAGGATCCCTGTGATGGTGAAGTCAGAACTATGTTGGATGAATGGTGTCGAGAGAGGTGACTGTGAATATGATCATGGAGGATATTTTTTGATCAAGGGTGCAGAGAAAACATTCATTGCACAAGAACAGATTTGTTTGAAGAGACTGTGGGTTTCCAGTAATCCAACTTGGATGGTTGCATACCGGCCAATCTGGAAAAGGAAAAGAGTATATGTTAAATTAGAACCTCCAAAAGATGAAAATAATAGAGGAGGAGAAAAAGTTCTTACAGTGTATTTTTCATCAACAGAGATTCCCATTTGGATATTGTTTTTTGCGCTTGGTGCATCGTCAGACAAGGAAGTTGTTGATTTGATTGATTTCAACATTGATGATGCTGGTATTTCAAATATTCTTGTTGCATCTATTCATGAAGCGGACAGGGAAGCAGAAAAGAAAGGCATGTACTTCCGTAGACAAGGCAATGCTATCAGCTTTGTAGATAAACTTGTGAAAAGTTGTAAATTTCCTCCTGGAGAAAGTATTCAAGAATGCATTAGCAAGTATTTGTTTCCCAACTTTAGTGGCGTCAAGCAAAAGGCTCGCTTTCTTGGGTATATGGTGAAGTGTCTTCTACAAGCCTATACTGGGCGCAGAAAATGTGATAACAGAGATGATTTCAGAAACAAAAGATTAGAATTGGCTGGTGAGCTGCTTGAGCGAGAGCTTAGAGTGCACATTAGACATGCTGAAAGGCGCATGGTAAAAGCTATGCAGAGAGAACTTTATGGAGATCGTGACCTGCGACCTATTGAAAATTATCTGGATGCTTCCATTATCACCAATGGTCTTTCCAGGGCATTCTCAACTGGGCAATGGTCCCATCCTTTCAAGAGGATGGAAAGGATATCTGGTGTAGTGGCAACTCTTAGACGAACAAATCCCTTGCAGATGACAGCTGACATGAGGAAAACACGTCAGCAGGTCCAATACACAGGAAAGGTTGGGGATGCCAGATACCCACACCCTTCTCACTGGGGGAAGGTTTGCTTTCTCTCTACTCCGGATGGTGAAAATTGTGGGCTTGTAAAAAATTTGGCCATTACAGGACTTGTCTCAACAGAGGTATTGGATCCATTGGTTGATAAATTGTTTGATTGTGGAATGGAGAAACTGGTAGATGATACCTCTACCAAGCTGTCTGGAAAGAATAAAGTTTTTCTGGATGGTGACTGGGTTGGAGTATGCGAAGATCCCATTTCATTTGTTGTGGAGCTAAGAACTAAACGGCGGCACAAGGAATTGCCTCAACAGGTGGAAATCAAAAGAGACGAACAACAAGGAGAAGTTCGCATTTTTTCTGACGCTGGAAGGATTCTACGTCCTCTCTTAGTAGTTGAGAATTTAAAGAAGGTTAAAACATTTAAAGGGGATGATTTTACTTTCCAGTCTCTTTTGGACAAGGGAATCGTGGAGCTCATTGGAGCTGAGGAAGAAGAAGATTGCTCTACAGCATGGGGCATTAAATACCTCTTAAAGGGACATGATGACCCACCGGTGAAATACACACATTGTGAACTTGATATGTCTTTTTTATTAGGGTTAAGTTGTGGAATAATCCCTTATGCAAATCATGACCATGCAAGGAGAGTACTATACCAGTCTGAGAAGCACTCTCAACAGGCTATTGGTTTTTCCACAACGAACCCTAATATTAGAGTGGATACCCTCTCTCACCAACTATACTACCCTCAGAGGCCACTTTTTCGGACAATGATTTCTGATTGTCTGGGAAAACCAGGATATTCAGAAGGTCATAAAGGAATAGTGCCAAGGCCTGAATACTTCAATGGGCAGATTGCCATTGTTGCAGTTAATGTTCACCTGGGGTACAACCAAGAGGACTCATTGGTAATGAACCGGGCTTCATTAGAGCGTGGTATGTTTCGTTCAGAGCACATAAGAAGTTATAAATCTGAGGTCGACAATAATGAATCATTGGACAAAAAGCGAAAGTCCGAGGACTCTGTACATTTTGGAAAGATGCAGAGTAAAATTGGACGTGTTGACAGCCTTGATGATGATGGTTTTCCATTCATCGGTGCAAACCTGCAGAATGGTGATATTGTCATTGGAAGGTGTGCAGAATCTGGGGTTGATCACAGCATAAAACTGAAGCATACTGAGAGGGGCATGGTTCAAAAGGTTGTGGTGTCAGCAAATGATGATGGAAAAAATTTTGCTGTAGTATCTCTGAGACAGGTCCGAACTCCATGCCTTGGAGACAAGTTTTCAAGCATGCATGGGCAAAAGGGTGTTCTGGGGTTTCTAGAGTCCCAGGAGAACTTCCCTTTCACAATACAAGGAATAGTTCCAGATATTGTAATAAACCCACATGCATTTCCTTCACGTCAGACTCCTGGTCAATTGCTAGAGGCTGCTTTGGGAAAGGGGATTGCCTGTGGTGGTTTGCTGAGACATGCCACCCCTTTCTCCACCCTCTCTGTGGATGCAATAGCAGATCAACTTCACAGGGCTGGATTTTCAAGATGGGGACATGAAAGGGTGTACAATGGACGCACTGGAGAAATGCTTCGCTCACTCATATTTATGGGGCCAACATTCTACCAGCGCCTGATTCACATGGCTGAGGATAAAGTAAAGTTCCGCAACACGGGGCCAGTCCACCCGCTCACCCGTCAGCCAGTGTCGGATCGGAAGCGCTTTGGTGGGATCAAATTTGGGGAGATGGAGCGCGACTGCCTCATTGCTCACGGTGCTGCAGCAAATCTACATGAACGTCTCTTCACCCTCAGCGACTCAGCCTATATGCACATCTGTCGGAGATGCAAGAATATATCGAATGTGATCCAGCGTTCTGTGGCGGGTGGGCGGAAGGTAAGGGGCCCGTATTGTCGATACTGCGAGTCTTCTGAGGAAATAGTGAAGGTGAACGTGCCATATGGGGCGAAGTTGTTGTGCCAGGAGCTCTTCAGCATGGGCATATCTTTGAAGTTTGAGACCCAGCTGTGTTAA 3597 0.4368 MGASDAKGDLGMSSSMGEKLSNGVQMEIDDDLMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGESDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEVLDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGHDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHATPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0639 1198 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 52 1192 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vvi4g0639 1198 CDD RNA_pol_B_RPB2 63 1194 IPR015712 GO:0003899|GO:0006351|GO:0032549
Vvi4g0639 1198 Pfam RNA polymerase Rpb2, domain 6 725 1095 IPR007120 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 Gene3D RNA polymerase alpha subunit dimerisation domain 1082 1196 - -
Vvi4g0639 1198 FunFam DNA-directed RNA polymerase subunit beta 826 944 - -
Vvi4g0639 1198 Gene3D - 725 1081 IPR037033 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 FunFam DNA-directed RNA polymerase subunit beta 408 596 - -
Vvi4g0639 1198 Gene3D RNA polymerase Rpb2, domain 2 250 408 IPR037034 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 43 1195 - -
Vvi4g0639 1198 ProSitePatterns RNA polymerases beta chain signature. 948 960 IPR007121 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 FunFam DNA-directed RNA polymerase subunit beta 55 240 - -
Vvi4g0639 1198 Gene3D - 56 238 - -
Vvi4g0639 1198 Gene3D - 409 628 - -
Vvi4g0639 1198 Pfam RNA polymerase Rpb2, domain 4 593 654 IPR007646 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 Pfam RNA polymerase Rpb2, domain 7 1097 1195 IPR007641 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 Gene3D - 755 944 IPR014724 GO:0003899
Vvi4g0639 1198 Pfam RNA polymerase Rpb2, domain 3 497 556 IPR007645 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 Pfam RNA polymerase beta subunit 62 457 IPR007644 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 Pfam RNA polymerase Rpb2, domain 5 669 715 IPR007647 GO:0006351
Vvi4g0639 1198 Pfam RNA polymerase Rpb2, domain 2 278 420 IPR007642 GO:0003677|GO:0003899|GO:0006351
Vvi4g0639 1198 FunFam DNA-directed RNA polymerase subunit beta 1082 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0639 Vvi-Chr4 6539118 6551181 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0639 - K16252 vvi:100256013 2432.14