Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0628 ATGTGTGTGGTGTCACCGCATACGATCTCAGCCACATTGGCCATGCTCGTGTTTATGTATCCTTCGATGTTCTCTACAGGCAGATACCTGAGGCATTTGGAGTATGAAGTGAATTATGTTCGAAACTTCACTGATGTAGATGACAAGATAATTGCTAGAGCAAATGAAATGGGGGAGGATCCAATAAATTTGAGCAGACGATACTGCCAAGAGTTCCATGTGGATATGACATATCTTCACTGCTTGCCTCCTTCGGTGGAGCCATGTGTCTCTGATCACATGCCCCAAATCATTGATATGATTAAGCAGATTATTGATAATGATTGTGCCTACAGAGTTGAGGGGGATGTGTATTTCTCGGTTGACAAATTCCCAGAATATGGCCGATTATCTGGGCGAAAAGTAGAAGATAATCGAGCAGGTGAACGGGTTGCTGTTGACTCTAGGAAGAAAAATCCTGCAGATTTTGCTTTATGGAAAGCTGCAAAGAAGGGGGAACCCTTTTGGGACAGTCCATGGGGGCCTGGGAGACCTGGATGGCATATTGAGTGCAGTGCCATGAGTGCTGCTTATCTGGGTTACTCATTTGACATTCATGGTGGAGGGATGGACCTTGTGTTTCCCCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCCTGTAAACAGAGTAATATAAGCTATTGGATACACAATGGATTTGTCACCATTGATTCAGAGAAAATGTCAAAATCCCTTGGAAACTTCTTCACAATACGACAGGTTATAGACATTTACCATCCGCTAGCTTTGAGGCTTTTCTTGATAGGAACCCACTATCGTTCCCCAATCAACTACTCAGATGTGCAGCTTGAAAGTGCCTCTGACCGTGTTTTCTACATTTATCAGACGCTACACGACTGTCAAAATGCTATGGACCAGGATGATATGACAAAGAAGGATTCTGTCCCACCTCATATTTTGGATTGCATCAATAAATTTTACAATGATTTTCTGACTTCAATGTCAGACGATCTTCATACTCCTGTTGTTTTGGCTGCTTTATCTGACCCATTGAAAACCATCAATGATCTGCTACATACTCGTAAGGGAAAGAAGCAAGAACTGCGACTAGAATCACTGGCAGCTCTTGAAAAGGTTATCAGAGATGTTCTTACCATTTTAGGATTGATGCCTGCTAGTTACTCTGAGGCTTTGCTGCAGCTGAGAGAAAAGGCATTGAAGCGCTCCAAGTTAACAGAAGATCACATTTTGCAAAAAATTGAAGAAAGGACCATGGCAAGGAAGAACAAAGAGTATGAAAAATCAGATGCAATTAGGAAAGATTTGGCTGCTGTAGGAATTGCTCTCATGGATAGCCCAGATGGGACAACTTGGAGACCAGCTATTCCCCTTGCACTGCAAGAGCAGGTTGCTGCAACTTGA 1425 0.4281 MCVVSPHTISATLAMLVFMYPSMFSTGRYLRHLEYEVNYVRNFTDVDDKIIARANEMGEDPINLSRRYCQEFHVDMTYLHCLPPSVEPCVSDHMPQIIDMIKQIIDNDCAYRVEGDVYFSVDKFPEYGRLSGRKVEDNRAGERVAVDSRKKNPADFALWKAAKKGEPFWDSPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGMDLVFPHHENEIAQSCAACKQSNISYWIHNGFVTIDSEKMSKSLGNFFTIRQVIDIYHPLALRLFLIGTHYRSPINYSDVQLESASDRVFYIYQTLHDCQNAMDQDDMTKKDSVPPHILDCINKFYNDFLTSMSDDLHTPVVLAALSDPLKTINDLLHTRKGKKQELRLESLAALEKVIRDVLTILGLMPASYSEALLQLREKALKRSKLTEDHILQKIEERTMARKNKEYEKSDAIRKDLAAVGIALMDSPDGTTWRPAIPLALQEQVAAT* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0628 474 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 280 461 - -
Vvi4g0628 474 CDD CysRS_core 28 280 IPR032678 -
Vvi4g0628 474 PANTHER CYSTEINYL-TRNA SYNTHETASE 28 470 IPR024909 -
Vvi4g0628 474 NCBIfam cysteine--tRNA ligase 28 460 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vvi4g0628 474 Hamap Cysteine--tRNA ligase [cysS]. 3 462 IPR015803 GO:0004817|GO:0005524|GO:0006423
Vvi4g0628 474 SMART dalr_2_4 330 399 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
Vvi4g0628 474 Gene3D - 279 461 - -
Vvi4g0628 474 SUPERFAMILY Nucleotidylyl transferase 28 287 - -
Vvi4g0628 474 Gene3D HUPs 25 278 IPR014729 -
Vvi4g0628 474 PRINTS Cysteinyl-tRNA synthetase signature 37 46 IPR024909 -
Vvi4g0628 474 PRINTS Cysteinyl-tRNA synthetase signature 197 218 IPR024909 -
Vvi4g0628 474 PRINTS Cysteinyl-tRNA synthetase signature 166 184 IPR024909 -
Vvi4g0628 474 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 315 460 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi4g0628 474 FunFam Cysteine-tRNA ligase-like protein 129 279 - -
Vvi4g0628 474 Pfam tRNA synthetases class I (C) catalytic domain 28 287 IPR032678 -
Vvi4g0628 474 Pfam DALR domain 331 392 IPR015273 GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0628 Vvi-Chr4 6381596 6389416 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0628 K01883 - vvi:100245851 917.146