Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0627 ATGAGTCAGAGCTCAATCCCAGTGGCTTCGCAGAGGAGTGGAGGATCTGGAAATGTTGAAGAAGGCAGAGTTTTTATTAATGGAAGAGTTGCAATTGGAAGCACAGATGATGATTTTGTATGCGCCACTTTGGATTGGTGGCCTCCTGATAAATGTGACTATGGAACTTGCAGTTGGGGTAGAGCTTCTCTTCTCAATCTGGACCTTACCAACAAAATTTTGTTCAATGCCATCAAAGCCTTTTCTTCCTTAAAAATTAGGATGGGTGGCACCTTACAGGATAAAGTAATATACCAAAGAACCGGTGACCAACAACCCTGTGCTCAGTTTGTTAAAAATAGCTCAGAAATGTTTGGTTTCTCAGAAGGTTGCTTACCTATGTCGCGATGGGATGAGTTAAACCAGTTCTTCAGAGACGCTGGGGCTGTCGTGATTTTTGGATTGAATGCACTAAGTGGGAGGAGTATAGGCATGGATGGTTTGGCTACAGGAGCTTGGAATGGCAGTGATGCAGAATCCCTTATTCAGTATACTGTCAACAAGGGCTACACCATTCATGGTTGGGAACTAGGAAATGAGCTGACTGGAAATGGAGTTGGAGCAGGAGTTCCAGCAGATCAATATGCATCTGACATAAACACTCTCCAAAGCATGGTGCAAAAGATTTATGCAAGTTATGAAGCTAAGCCACTGGTCATTGGGCCAGGAGGGTTCTTTGATGCAAGTTGGTACACAGAATTCATAGATAAAACACTCAAATCTCTTCAAGTAGTTACCCATCACATATATAATCTCGGTCCAGGGGTTGATGATCACCTTATTGATAAAATTCTTGATCCATCCTATCTTGATGGTGGTTCCAAACCATTCCAAGACCTCCAAAGCATTCTACAGAATTCTGCAACTTCAGCAACTGCTTGGGTTGGTGAAGCTGGAGGGGCTTACAACAGTGGCCATAATCTTGTCACTAATGCATTTGCTTTCAGTTTCTGGTACCTGGATCAGCTTGGAATGGCATCATCTTATGGTAACAAGACATATTGTAGGCAAACCTTGATTGGAGGAAACTATGGCCTACTCAACACTACAACCTTTGTCCCAAATCCTGATTATTACAGTGCTCTTCTTTGGCACCGTTTAATGGGAAGAAATGTTCTATCAACCAGCTTCAATGGTACAAAGAAAATACGCGCTTACTCTCACTGTTCCAAACAATCCCCAGGAATCACATTGCTATTGATCAACCTAGACGGTAACACTACACTTCGAGTCCAAGTTTCAACTGAAAATGATGGTAACAACAGGACTTCGACTTTACAAAGTAAAAACCAAACTCAAAGATCAAATTTTGCAAGCACAAGAGAAGAATATCATTTGACAGCCAAAGATGGGAATTTACACAGCCAAACACTGCTTCTAAACGGGAAAGTTCTTACTGTAAATTCATCGGGCAGTATCCCTCCCTTGGAACCTATAAGTGTGAGCTCGTTGGATCCTATAACTGTTGCTCCTTTCTCTGTTGTGTTTGCTCGCTTCCCTGATAGCTCAATCCCAGTGGCTTCGCAGAGGAGTGGAGGGTCTGGAAATGTTGAAGAAGGCAGTGTTTTTATTAATGGAAGAGTTGCAATTGGAAGCACAGATGATGATTTTATATGTGCCACCTTGGATTGGTGGCCTCCTGATAAATGTGACTATGGAACTTGCAGTTGGGGTAGAGCTTCTCTTCTCAATCTGGATCTTAGCAACAAAATTTTGCTGAATGCTATCAAGGCTTTTTCTCCCCTGAAAGTTAGGATGGCTGAACCTTTCAATAACTATTGGGCCGTCGTGATTTTTGGATTGAATGCACTAAGTGGAAGGACTATAGGCCTGGATGGTTTGGCTGCAGGAGCTTGGAACTCCAGTGATGCAGAATCCCTTATTCGGTATAGTGCAAACAAGGGCTACACCATTCATGGTTGGGAACTTGGAAATGAGCTGACTGGAAATGGAGTTGGAGCAGGAGTTCCAGCAGATCAATATGCATCTGACATAAACACTCTCCAAAGCATGGTGCAAAAGATTTATGCAGGTTTTGAAGTTAAGCCACTAGTCCTAGGGCCAGGAGGGTTCTTTGATGCAAGTTGGTACACAGAATTCATAGATAAAACACTCAAATCTCTTCAAGTAGTCACCCATCATATATATAACCTCGGTCCAGGGGTTGATGATCACCTCATTGATAAAATTCTTGATCCGTCATATCTTGATGGTGGTTCCAAGCCATTCCAAGACCTCCAAAGCATTCTACAGACTTCTGCAACTTCAGCAACTGCTTGGGTTGGTGAAGCTGGAGGGGCTTACAACAGTGGCCATAATCTTGTCACTAATGCATTTGCTTTCAGTTTCTGGTACCTGGATCAGCTTGGAATGGCATCATCTTATGATACCAAGACATATTGTAGGCAAACCTTGATTGGAGGAAACTATGGCCTACTCAACACTACCACCTTTGTCCCAAATCCTGATTATTACAGTGCACTTCTTTGGCACCGTTTGATGGGAAGAAATGTTCTATCAACCAGCTTCTATGGGACAAGGAAAATACGTGCTTACGCTCACTGTTCCAAACAATCCCCAGGAATCACATTGCTATTGATCAACCTAGATGGTAACACAACAGTTCAAGTCCAAGTTTCAACTGAAAATGCTGGCAACAGGACTTCAACTTTACAAGATACAGACAAAACTCAAAGATCAAATTTTTCTAGGATGCGTCGAGTTTCTAAAATTGATGCAAGCGTGAGAGAAGAATATCATTTGACAGCCAAAGATGGGGATTTACACAGCCAAACACTGCTTCTAAATGGGAAAGTACTGACCATAAATTCATCTAGGATTGTCCCTCCCTTGGAACCTATAAGGGTAAGCTCAATGGATCCTGTAATTGTTGCTCCTTTCTCTATTGTGTTTGTTCGCTTCCCTAATATCAATTACCCTGCCTGTAAGTATAAGTAG 2997 0.4231 MSQSSIPVASQRSGGSGNVEEGRVFINGRVAIGSTDDDFVCATLDWWPPDKCDYGTCSWGRASLLNLDLTNKILFNAIKAFSSLKIRMGGTLQDKVIYQRTGDQQPCAQFVKNSSEMFGFSEGCLPMSRWDELNQFFRDAGAVVIFGLNALSGRSIGMDGLATGAWNGSDAESLIQYTVNKGYTIHGWELGNELTGNGVGAGVPADQYASDINTLQSMVQKIYASYEAKPLVIGPGGFFDASWYTEFIDKTLKSLQVVTHHIYNLGPGVDDHLIDKILDPSYLDGGSKPFQDLQSILQNSATSATAWVGEAGGAYNSGHNLVTNAFAFSFWYLDQLGMASSYGNKTYCRQTLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNVLSTSFNGTKKIRAYSHCSKQSPGITLLLINLDGNTTLRVQVSTENDGNNRTSTLQSKNQTQRSNFASTREEYHLTAKDGNLHSQTLLLNGKVLTVNSSGSIPPLEPISVSSLDPITVAPFSVVFARFPDSSIPVASQRSGGSGNVEEGSVFINGRVAIGSTDDDFICATLDWWPPDKCDYGTCSWGRASLLNLDLSNKILLNAIKAFSPLKVRMAEPFNNYWAVVIFGLNALSGRTIGLDGLAAGAWNSSDAESLIRYSANKGYTIHGWELGNELTGNGVGAGVPADQYASDINTLQSMVQKIYAGFEVKPLVLGPGGFFDASWYTEFIDKTLKSLQVVTHHIYNLGPGVDDHLIDKILDPSYLDGGSKPFQDLQSILQTSATSATAWVGEAGGAYNSGHNLVTNAFAFSFWYLDQLGMASSYDTKTYCRQTLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNVLSTSFYGTRKIRAYAHCSKQSPGITLLLINLDGNTTVQVQVSTENAGNRTSTLQDTDKTQRSNFSRMRRVSKIDASVREEYHLTAKDGDLHSQTLLLNGKVLTINSSRIVPPLEPIRVSSMDPVIVAPFSIVFVRFPNINYPACKYK* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0627 998 Pfam Glycosyl hydrolase family 79, N-terminal domain 533 600 IPR005199 GO:0016020|GO:0016798
Vvi4g0627 998 Pfam Glycosyl hydrolase family 79, N-terminal domain 603 803 IPR005199 GO:0016020|GO:0016798
Vvi4g0627 998 Pfam Glycosyl hydrolase family 79, N-terminal domain 22 337 IPR005199 GO:0016020|GO:0016798
Vvi4g0627 998 PANTHER HEPARANASE-RELATED 2 519 - -
Vvi4g0627 998 Gene3D Glycosidases 54 379 - -
Vvi4g0627 998 Gene3D Glycosidases 591 845 - -
Vvi4g0627 998 FunFam heparanase-like protein 3 59 379 - -
Vvi4g0627 998 FunFam heparanase-like protein 3 599 845 - -
Vvi4g0627 998 MobiDBLite consensus disorder prediction 429 453 - -
Vvi4g0627 998 SUPERFAMILY (Trans)glycosidases 546 847 IPR017853 -
Vvi4g0627 998 SUPERFAMILY (Trans)glycosidases 35 381 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0627 Vvi-Chr4 6370154 6380258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0627 529 995 Glycoside Hydrolase AT5G61250 43.295 4.81e-142 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0627 K07964 - vvi:100264535 1052.74