Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0613 ATGCCTTCTTTAACACCTCTGAAACGATCTCCATTGTCGATCCATCGGCTTCATGTTCGCCTATTCTCCCAACCAGTCGACTCGCCACCTTCCTCATTGACCCTATTCGAAATCTCTCACTCCAATCATCCCAAAAACCCTAATTTCACATATTTTCTGAAATGGGTTTCGGGGATCACCTTTGTTGGTTCAGGCCTAGGCTACTTGTACTACTCTGATTCTGCTTTTGATTCTTTAAAGAATTCGTTTTCATCCTTTGCCGAATGGTCAAAGGCTACTAAAGAACCAATGACTGGGAAGAATCCCAAGTTTCTATTTGGAGAAGCATACAGGAGAAAGATTTTTTTCAACTATGAGAAACGCATTAGGATGCGAAGCCCTCCTGAAAAGGTTTTTGAGTACTTTGCATCGTTCAGAACCCCTGAAGGAGAAATACTAATGAGACCAGCAGATTTCATGCGGGCAGTTGTTCCTGTGTTCCCTCCATCTGAATCACACCTTGTTAGGGATGGGTATTTGAGGGGGGAAAGGAGTCCTGGAGAGTTACGTTGTGATCCGTCAGAATTTTTTATGTTTTTTGATATGAACAATGATGGACTTATATCTTTCAAAGAGTATATCTTTTGTGTTACCCTACTGAGCATCCCAGAGACAAGCTTTTTAGTGGCATTCAAAATGTTTGACATTAACAATAACGGGGAGATTGATAAGGAGGAATTCAAGAAAGTTATGGCTTTGATGCGAGCTCATAACAGACAAGGAGCTCTCCACAGGGATGGACTTCGATTTGGATTCAGAACTGTTGGTTCTGTGGAAAATGGAGGCCTGCTGGAGCACTTCTTTGGTAAAGATGGAAAGGCAAAACTCCAACATGAGAAATTTTTCCAGTTTATGAGAGATCTGCATGATGAACTGCTGAAGTTGGAGTTTGCCCATTATGATTACAAATTACGAGGATCCATTTCAGCTAAGGATTTTGCCTTATCCATGGTAGCTTCTGCCGACTTGAGTAATTTAAACAGGTTGCTTGATCGGGTTGATGGATTAAACAAGCAGTCTTCTCTAAGTGACATTCGTATTACCTTTGAGGAATTTAAGAGTTTTGCAGAGCTACGTAGAAGATTGAGACCATTTGCATTGGCTCTTTCTAGTTATGGGAAAGTAAATGGACTATTGACAAAGACGGATTTCCAACGTGCAGCATCCAATGTATGTGGCATTTCTCTCAGCAAGTGTGTGGTTGAAATCATTTTCCATGTGTTTGACATGAACGATGATGGAAATTTAAGCTCAGAGGAGCTTGTGAGAGTTTTACAGAAACGGGAAAGGGACATTGCTCAACCGATGGAGTCAGGAATCATGGGATTTTTTTCCTGCTGTTGTAATCATTCAAATTACGGCTCTATTTCAGGACTTCTTTCTTGA 1425 0.4105 MPSLTPLKRSPLSIHRLHVRLFSQPVDSPPSSLTLFEISHSNHPKNPNFTYFLKWVSGITFVGSGLGYLYYSDSAFDSLKNSFSSFAEWSKATKEPMTGKNPKFLFGEAYRRKIFFNYEKRIRMRSPPEKVFEYFASFRTPEGEILMRPADFMRAVVPVFPPSESHLVRDGYLRGERSPGELRCDPSEFFMFFDMNNDGLISFKEYIFCVTLLSIPETSFLVAFKMFDINNNGEIDKEEFKKVMALMRAHNRQGALHRDGLRFGFRTVGSVENGGLLEHFFGKDGKAKLQHEKFFQFMRDLHDELLKLEFAHYDYKLRGSISAKDFALSMVASADLSNLNRLLDRVDGLNKQSSLSDIRITFEEFKSFAELRRRLRPFALALSSYGKVNGLLTKTDFQRAASNVCGISLSKCVVEIIFHVFDMNDDGNLSSEELVRVLQKRERDIAQPMESGIMGFFSCCCNHSNYGSISGLLS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0613 474 Pfam EF-hand domain pair 190 211 IPR002048 GO:0005509
Vvi4g0613 474 Pfam EF-hand domain pair 390 441 IPR002048 GO:0005509
Vvi4g0613 474 SUPERFAMILY EF-hand 250 369 IPR011992 -
Vvi4g0613 474 SUPERFAMILY EF-hand 188 444 IPR011992 -
Vvi4g0613 474 CDD EFh_MICU 220 441 - -
Vvi4g0613 474 ProSiteProfiles EF-hand calcium-binding domain profile. 414 444 IPR002048 GO:0005509
Vvi4g0613 474 ProSiteProfiles EF-hand calcium-binding domain profile. 215 250 IPR002048 GO:0005509
Vvi4g0613 474 SMART efh_1 413 441 IPR002048 GO:0005509
Vvi4g0613 474 SMART efh_1 185 213 IPR002048 GO:0005509
Vvi4g0613 474 SMART efh_1 219 247 IPR002048 GO:0005509
Vvi4g0613 474 Gene3D - 302 451 - -
Vvi4g0613 474 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Vvi4g0613 474 Pfam EF hand 223 246 IPR002048 GO:0005509
Vvi4g0613 474 ProSitePatterns EF-hand calcium-binding domain. 228 240 IPR018247 -
Vvi4g0613 474 Gene3D - 125 260 - -
Vvi4g0613 474 CDD EFh 188 245 IPR002048 GO:0005509
Vvi4g0613 474 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 41 462 IPR039800 GO:0005509|GO:0006851
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0613 Vvi-Chr4 6104685 6127894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0613 54 418 EF-hand Containing Proteins AT4G32060 62.629 3.58e-166 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0613 K22827 - vvi:100854243 953.355