Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0612 ATGGTGGGTCTATCTGTTGGTGAGAAGCATTTCATACAGGGTGGCATTGCTCAAGACCTTCGTACTGATGGTCGAAGAAGGTTAACATATCGACCTTTCAATGTAGAAACTGGAGTCATCCCACAGGCTAATGGATCAGCAAGAGTCAGGTTGGGTGGAACTGATGTTATTGCCAGTGTGAAGGCTGAGCTTGGAAAACCAAGCCCATCACAACCTGACAAGGGAAAGGTCAATATATATGTGGATTGCAGTCCCACGGCTGCACCAATGTTTGAGGGCAGAGGAGGGGAGGAATTGTCAACAGAACTTTCAGGTGCTCTTCAGCATTGTCTCCTTGGTGGTAAAAGTGGAGCAGGGGCTGGAATTGATCTCTCATCTCTGGTAGTTGTGGAAGGAAAGGTTTGTTGGGATCTCTATATTGATGGCCTTGTGGTTAGTTCTGATGGAAATCTGCTGGATGCCTTAGGTGCTGCCATTAAGGCTGCTCTGACCAACACGGGCATCCCAAAAGTCGAAGTTGCCGTTGGTGCATCTGGGGATGGCCTACCAGAGGTTGATATAAGTGATGATGAATATTTACAGTTTGACACCTCTGGGGTCCCTGTCATAGTTACCTTAACAAAGGTTGGTAGGCATTATATTGTAGATGCAACTTTAGAAGAGGAATCCCAAATGAGCTCAGCAGTTTCTGTTTCAGTGAGCGGGCAAGGCCGCATATGTGGGCTGATCAAACGAGGGGGTGCAGGTCTAGATCCAAGCGTTATACTTGATATGATATCTGTGGCAAAACATGTAAGTGAACAACTTATGAATAAATTGGATTCTGAGATATCTGCTGCAGAAGCCTTTGAAGAAGAGTCATGA 864 0.4595 MVGLSVGEKHFIQGGIAQDLRTDGRRRLTYRPFNVETGVIPQANGSARVRLGGTDVIASVKAELGKPSPSQPDKGKVNIYVDCSPTAAPMFEGRGGEELSTELSGALQHCLLGGKSGAGAGIDLSSLVVVEGKVCWDLYIDGLVVSSDGNLLDALGAAIKAALTNTGIPKVEVAVGASGDGLPEVDISDDEYLQFDTSGVPVIVTLTKVGRHYIVDATLEEESQMSSAVSVSVSGQGRICGLIKRGGAGLDPSVILDMISVAKHVSEQLMNKLDSEISAAEAFEEES* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0612 287 Coils Coil 266 286 - -
Vvi4g0612 287 Pfam 3' exoribonuclease family, domain 1 30 169 IPR001247 -
Vvi4g0612 287 SUPERFAMILY Ribosomal protein S5 domain 2-like 4 223 IPR020568 -
Vvi4g0612 287 FunFam Exosome complex component RRP42 3 286 - -
Vvi4g0612 287 Pfam 3' exoribonuclease family, domain 2 200 263 IPR015847 -
Vvi4g0612 287 PANTHER EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN 3 278 - -
Vvi4g0612 287 CDD RNase_PH_RRP42 4 279 - -
Vvi4g0612 287 Gene3D - 3 286 IPR027408 -
Vvi4g0612 287 SUPERFAMILY Ribonuclease PH domain 2-like 196 282 IPR036345 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0612 K12589 - vvi:100261229 520.776