Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0607 ATGTACAGAGTAGCGAGCCCATCTGAATACCTGGTCATCACCGGAGTTGGGATCAAAGACATCAAGCTTGCAAAGAAGGCATGGGTAGTCCCCGGCCAATCTTGCTCCGTCTTTGATGTCTCTCCGGTGAACTACACCTTTGAGGTTCAAGCCATGAGTGCCGAAAAGCTTCCCTTCGTTCTCCCGGCAGTCTTCACTATCGGCCCGCGACTCGATGATGAGCCCAGCCTCTTGAAGTACGCCAAGCTCATCTCTCCCCATGACAAGCTCTCCAACCATGTCAAAGAGCTTGTGCAGGGTATCATCGAAGGGGAGACTCGGGTTTTAGCCGCTTCTATGACTATGGAAGAGATTTTTAAGGGAACCAAAGATTTTAAGCAGGAGGTTTTTGAGAAAGTCCAGCTTGAGCTCAACCAGTTTGGGCTTCTGATCTACAACGCCAATGTTAAGCAGCTTGTGGATGTCCCCGGCCACGAGTACTTCTCCTACTTGGGTCAAAAGACGCAGATGGAAGCTGCCAACCAAGCCAAAGTGGATGTTTCAGAGGCGAAGATGAAGGGGGAGATCGGTGCGAAGCTTCGGGAAGGGCAGACGCTGCAGAACGCGGCGAAGATTGATGCAGAGACCAAGATCATATCCACCCAAAGGCAAGGAGATGGGAAGAAGGAGGAGATAAGGGTGAAAACCGAGATTAAGGTTTATGAGAACCAGAGAGAGGCTGAGGTGGCGGAGGTGAATTCGGTGTTGGCGAAGAAGAAGGCAGTGTGGACTAAGGAGGCGCAGGTGGCGGAGGTGGAGGCGGCCAAGGCAGTGGCGTTGCGGGAGGCGGAGTTGCAGATGGAGGTGGAGAGAATGAATGCTTTGACCAGGACTGAGAAGCTCAAGGCTGAGTTTCTTAGCAAAGCCAGTGTGGAGTATGAAACCAAGGTACAAGAAGCAAACTGGGAACTCTACAAAAAACAGAAGGCAGCAGAAGCAGTCCTCTACGAGAAGGAGAAAGAAGCCGCTGCCCAAAAGGCATCGGCAGAGGCAGCATTCTACGCACGCCAGCAACTCGCAGATGGAGAATTGTATGCGAAGAAGAAAGAAGCCGAAGGAATCGTGGCGCTGGCGCAAGCCCAAGGCGTATATCTACGCACACTCCTTGATGCTCTGGGCGGAAACTATGCTGCATTGAGGGATTATATGATGGTGAGTGGCGGAACATTTCAAGAGATTGCCAAGATTAATGCTGAGGCTGTACGAGGTCTGCAGCCTAAAATTACCGTTTGGACTAATGGAGGTGGTGGCGCGGAGGCCTTGGATGGTGGTGGGAGTGGCGGCAGCACCGCAATGAAGGAAATTTCCGGCGTTTACAAGATGCTACCACCGTTGTTTAGTACTGTCCATGAACAAACCGGAATGCTGCCACCATCATGGATGGGCACCTTAACCCACTCGGCCCATGACCAGTCTACCATGAATTGA 1467 0.5194 MYRVASPSEYLVITGVGIKDIKLAKKAWVVPGQSCSVFDVSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRLDDEPSLLKYAKLISPHDKLSNHVKELVQGIIEGETRVLAASMTMEEIFKGTKDFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQAKVDVSEAKMKGEIGAKLREGQTLQNAAKIDAETKIISTQRQGDGKKEEIRVKTEIKVYENQREAEVAEVNSVLAKKKAVWTKEAQVAEVEAAKAVALREAELQMEVERMNALTRTEKLKAEFLSKASVEYETKVQEANWELYKKQKAAEAVLYEKEKEAAAQKASAEAAFYARQQLADGELYAKKKEAEGIVALAQAQGVYLRTLLDALGGNYAALRDYMMVSGGTFQEIAKINAEAVRGLQPKITVWTNGGGGAEALDGGGSGGSTAMKEISGVYKMLPPLFSTVHEQTGMLPPSWMGTLTHSAHDQSTMN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0607 488 SUPERFAMILY Band 7/SPFH domain 33 172 IPR036013 -
Vvi4g0607 488 PANTHER FLOTILLIN-RELATED 1 480 IPR027705 -
Vvi4g0607 488 Gene3D Band 7 domain 39 155 IPR036013 -
Vvi4g0607 488 Pfam SPFH domain / Band 7 family 6 183 IPR001107 -
Vvi4g0607 488 CDD SPFH_flotillin 28 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0607 Vvi-Chr4 6021156 6034187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0607 K07192 - vvi:100254251 901.738