Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0606 ATGGATACTCCGTTGTTTGTTGCTCGTCCTGACCCTGAGGATACATCTGTGCTTACTCTCCAACATCGACATCGATCATCCACTATTTGTGTTGATCCTGATATGGGTAGTGATTTGACTTGTCGACAGGTCAAATGTAGTTCTTCATGGCAGTCTGCGACGCCTCCATCGATGCCTTCGTCGTCTCAGCATCCACCTCAGGAGTCTCGGAATCAGATGGAGATAAATGCAGGTCGTTATTTTCCAACTATTGCCCATGAACAAAGATCAGCAGCCCTTGGAATGATACAGGAACCCCTTTTTTCCAACACATTGAACTTAGGGTCTTACAGATCAGGCCATGCTGAGCTTGGAAATTCATTTTTGGCTCTCCTATCTGGACCGCCATCTTTGTTGCAATGTGATCTCCAGCAATTGCTGAATCCAAAGCCAATCTGTACCTCCAACAAACTTCCTGTTTATAGTAGCAGTGTCACGGTCAGTACTGCTGGAAGTGGAGTTCCACATGCACCAACTGGATCATTATCAGAAAATCTTGGCTATCAAAAGCCAAGAAGTGGCATGGATTTCTGTCCAATTGTTTCTTCCACAACAGCTGTAAGTACCAATTGTAGTAGCACTTCTGTTTTGCATGATGCCCTTCAGGCTGCAAACTTAAATCTCCAAAGTTCGGATCTGGCCAAGGCGACTATCCATCACATGGTTCCTCGCAATGAGAAAGTAAGGGAATTTTCTTCTCTGAAGGGGGGATGGCCTGTTAACACAGGCTCTGCTAATTTTGGGAAGCTCCATGGCACTAATATTCATGCTTCACAAAAGCGACCATCAGAAGCAAGCTCTTCTCTTTGTGATCACCAAGCTACTTTCACAAGTGGGTGCCCTCGAGTATTTTGCTTTGGTACAAGTACTCGCTCTACTCGTAATCCTCATCCTATTTACAATTTTTTGAATTATCATCGATTATCTTCACCCTATTCTGCTTTTGTTTCTGCTATATCCTCTGTTTCTCTTCCAAAGAGCACCCATGAAGCTCTTTCCCATCTAGGCTGGCGACAGGCAATGGTGGATGAAATGGATGCTCTGCACTTTAATGGCACTTGGGATCTTGTTGTTTTACCTTCTGGTAAATCTACAGTTGGCTGTCGTTGGGTCTATGCAGTTAAGGTTGGTCCTGATGGTCAGGTTGATCGCCTTAAGGCCCGCTTAGTTGCTAAAGGCTATACTCAGATTAGGGTTCCAGAAGATCAGAGTGGATGGGATTGGCCCGAAGGAATCTCAGCAACGGCTGGTTTCTTGAAGTCTAGTGTGACTGTGCCCAGCCTGTACAAGAAGTCTGACTTATCTCATCTGGTTGGTTCATCTGGAGATTTATTAAGGTTTGAACAGCCTTGGGACAATGTTGTGTTTCCAAAGAACCCGCGTACAGGTCAGAATTCAGTTAATGATGTTTTACATAATAAACAATGGGGGAATGGTTCGGACAGAAGCAATTTTCTTCTCAAGGGCTCAGTTGGTACTTCACAAAGCAATTTGCATGCGCTGGAAAGTAACCAGATAATGGAGAGCACTAGGTCTAGGTGCTCGACAATGTCAAAGGTAGTGGGTAGAGGAGGAACTGATAATGATGCTCAGTCCATTTCTGCTTACGTTGATTCAATTTCTAGGAGTGGAACTTCATTTATTTATAGCCCACCTTTACCCAACGAACGAACCCTTGGTAAGGATTCTGATATCAGCAGACATAACAATTCAAGGGAGGGTGTTATCTTGGAAAGAGATGCTGTTTCTTCAAACATTGAGTTGAGGCTTGGGCAACCATGTCAGCAGAGTCGGACATCGCGAAATTCAGTTCTACCTGTCATGGGACCTCGGATATTAGACACACTTGGTGATCCACAGAAGTCATTTTTCCCAGAGCAATTGATTCATAACACAGCTAATTCCAATGTGATGGAGGAATGCAGGCAATACCTTCAATGTGCCACGGGTACATCTAATTCCAGTGCAAGAAGAGAGCAAATTCCATTCAACTGTGTGAACCATACTTTTGAAATCAATAATGCCTTAGATGCAGCTAAACTAGAACAATTCAGAGGTGATGCGGCCAAGAGTTCAGTGATTTCGATGCTACTTTCACACTTAACTACACCGACTGAAGGGAATATGCAATCTAAAGCAATTAATAATGTAGTGAATGACAATGGCCATTTTGTGCCTAGGTCACTACATTTTGAATCTCACATTGCCAAGCGTGATCCAGTTTATTCTCCATGGAATAGTGCTAATGGATTAGAAAGGGAGTCAAACATAAATGACTTGAGTTTCCATAGATATATGGACAAGGGTAAAAGAGTGGGATTTGTTACTGATGGATCGTATGCTGCAACAGAATCAACCTTTGGATTTTATAAGCAGATGGGAAGTTCAGGCACTTTTACTGGAGTTGCTGGAAGTGATCATCCCAGTAGTTCTGCAGTGCATGACAAAAGCTGTTATTCACGTCAGTTGTTGGGCATGCCACCAGATGCATCCAATGCCAGCAACTCTTTCAACTTTTCTGGGAAGTTTTCCTGCCTTGGAAGCAGTGGACTTGATAATGTTTTTGTTAAATCTATAAGTCCACCCATGGGTTCTGGGATAAATGTGCCATCGCAAGCAGTCTCAACAGGCTTTTCTTCGGCTTCTTCACTGTCTGTGCCCAATTTGACTCCATCTTTGCCAACTAAGGAGAGCATTGGAGTAAGCCCATATTTGCTCGATGAAAATTTTAAACTTCTAGCTTTGAGACATATTCTGGAGTTATCTAATCGAGAGCATGCAATTACTTCTCTTGGAATGAACCAAAAGGAAGGGAGATTCAGTAGCTCTTCTGATCCTAAAGTCCAGGGCTCTGTTGTTGATACATTAACATCTGATGAACTGAAGCATGGATTGAAACTTACCAGTGAACAAAATGCTTCTGAAGTTCCCCTGAAATTACTCCAATCTGGTGGTAATCACAGGATGGGTGGTGATATGGAAAAATTGGTTCCTGTGGCAGGCACTTTTGTGCAAATGGCTTTGGAGGTTTACCATGAAAAGATGTGCTTTTTGGATATAAGTAGGGTCAAATATGGAGAGGAAGAGGGTGGGTGGTGGTTTGGTGAAGTTAGAGATGGGTATGGAGTCGGGCTGTGGAAATCCATTACGAAGGAATGA 3198 0.4321 MDTPLFVARPDPEDTSVLTLQHRHRSSTICVDPDMGSDLTCRQVKCSSSWQSATPPSMPSSSQHPPQESRNQMEINAGRYFPTIAHEQRSAALGMIQEPLFSNTLNLGSYRSGHAELGNSFLALLSGPPSLLQCDLQQLLNPKPICTSNKLPVYSSSVTVSTAGSGVPHAPTGSLSENLGYQKPRSGMDFCPIVSSTTAVSTNCSSTSVLHDALQAANLNLQSSDLAKATIHHMVPRNEKVREFSSLKGGWPVNTGSANFGKLHGTNIHASQKRPSEASSSLCDHQATFTSGCPRVFCFGTSTRSTRNPHPIYNFLNYHRLSSPYSAFVSAISSVSLPKSTHEALSHLGWRQAMVDEMDALHFNGTWDLVVLPSGKSTVGCRWVYAVKVGPDGQVDRLKARLVAKGYTQIRVPEDQSGWDWPEGISATAGFLKSSVTVPSLYKKSDLSHLVGSSGDLLRFEQPWDNVVFPKNPRTGQNSVNDVLHNKQWGNGSDRSNFLLKGSVGTSQSNLHALESNQIMESTRSRCSTMSKVVGRGGTDNDAQSISAYVDSISRSGTSFIYSPPLPNERTLGKDSDISRHNNSREGVILERDAVSSNIELRLGQPCQQSRTSRNSVLPVMGPRILDTLGDPQKSFFPEQLIHNTANSNVMEECRQYLQCATGTSNSSARREQIPFNCVNHTFEINNALDAAKLEQFRGDAAKSSVISMLLSHLTTPTEGNMQSKAINNVVNDNGHFVPRSLHFESHIAKRDPVYSPWNSANGLERESNINDLSFHRYMDKGKRVGFVTDGSYAATESTFGFYKQMGSSGTFTGVAGSDHPSSSAVHDKSCYSRQLLGMPPDASNASNSFNFSGKFSCLGSSGLDNVFVKSISPPMGSGINVPSQAVSTGFSSASSLSVPNLTPSLPTKESIGVSPYLLDENFKLLALRHILELSNREHAITSLGMNQKEGRFSSSSDPKVQGSVVDTLTSDELKHGLKLTSEQNASEVPLKLLQSGGNHRMGGDMEKLVPVAGTFVQMALEVYHEKMCFLDISRVKYGEEEGGWWFGEVRDGYGVGLWKSITKE* 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0606 1065 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 364 410 IPR013103 -
Vvi4g0606 1065 MobiDBLite consensus disorder prediction 561 580 - -
Vvi4g0606 1065 PANTHER GAG-POL-RELATED RETROTRANSPOSON 334 411 - -
Vvi4g0606 1065 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0606 Vvi-Chr4 5975556 6003089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0606 301 426 Receptor kinase-like Gene Family AT4G23160 38.732 2.12e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0606 - - vvi:100255892 1675.22