Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0599 ATGATGAAGGATATGGTTTTAAGGGAAGGAGTGAAATTAGAAGCTGCATTGATTAATTTGTATGTGAAATGTGGCTATTTGGATGGTGCAAGGAAATTATTTGATGAAATACCAGAGAAGAACACTGTGGTATGGAATTCGTTGATTTGTGGGTATTGTCAAATTGGATCTCTGAATGAAGTGATTGAGCTTTTAAGAGAAATGCATCTTTCAAATCTTAAACCTGATAGGTTCACGGTCTCAGGTGTTCTGTCTGCTTGTGCTCAAATGGGGGCTTTTAATCTTGGAAACTGGGTCCATAGATTTGCTGAGAAGAAGGGGATCTGGGATGTCTTTATAGGGACTGCTTTGATAGACATGTATGCAAAATGTGGTTTCATTGGAGCAGCAAGGAAGGTGTTTGATCAGATGAATGAAAGAAATGTTGCCACATGGAATGCTATTCTTTCTGGATATGCTTCGCATGGGCAGGCTGAATCTGCAATTGAGCTCTTCAGTGAGATGAGGGAATCAGGGGCTAGACCTGATTCCATCACATTCCTTGCTGTCTTACATGCTTGCGCTCATTCAGGATTGGTTGAAAATGGTAAACAGTACTTTGATCTGATGCTGCAGTATTATAAGATTCCACCAAGGGTTGAGCATTATGGGTGTATGGTTGATCTTCTTGGCCGTGCAGGGCTTCTACAAGAAGCAAGGGAGCTTATCAAGATGATGGTTGTTGAACCAAATGTGGTTGTGTGGGGAGCATTACTAAGTGCTTGCAGCATCCATGGCAACATTGAGATTGGTGAGTGGGCAGCTCACCATATGATCAAATTGAATGCAATGGATGGTGGATCATATGTGATCTTGGCAAATTTATATGCATCAGCTCAAAGATTCAATAGGGTTAAAGCAGTTAGAGAGATGATGGTGGAAAAGGGGATTTGTAAGTCACATGGATGTAGCATGATTGAGATTGGGGATGTTGTTCATGAGTTTGTTGTTGCTGACAAAATGCACCCTAGATCAGAAGAGATTTACTCAGTGTTGGATGAATTAAGCAAGAAGCTCAAGATGGCAGGCTATGTTCCCTTGCTTGCCCTCGATGAAGAAGGTTAA 1104 0.4139 MMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVPLLALDEEG* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0599 367 FunFam Pentatricopeptide repeat-containing protein 115 355 - -
Vvi4g0599 367 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Vvi4g0599 367 NCBIfam pentatricopeptide repeat 43 76 IPR002885 -
Vvi4g0599 367 NCBIfam pentatricopeptide repeat 144 176 IPR002885 -
Vvi4g0599 367 NCBIfam pentatricopeptide repeat 115 142 IPR002885 -
Vvi4g0599 367 Gene3D Tetratricopeptide repeat domain 1 97 IPR011990 GO:0005515
Vvi4g0599 367 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 41 75 IPR002885 -
Vvi4g0599 367 Pfam E motif 258 320 IPR046848 -
Vvi4g0599 367 Pfam PPR repeat family 140 188 IPR002885 -
Vvi4g0599 367 Pfam PPR repeat family 40 88 IPR002885 -
Vvi4g0599 367 Gene3D Tetratricopeptide repeat domain 114 345 IPR011990 GO:0005515
Vvi4g0599 367 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 57 359 IPR046960 GO:0003723|GO:0009451
Vvi4g0599 367 Pfam PPR repeat 215 240 IPR002885 -
Vvi4g0599 367 Pfam E+ motif 325 352 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0599 Vvi-Chr4 5851877 5852980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0599 16 359 Glycoside Hydrolase AT3G49170 38.551 6.21e-87 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0599 - - vvi:100259519 742.265