Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0594 ATGTATTCGGCTTCCGCCATTGACAAGGCTACCGAATTTTGCTTCTTACTATGCCATGAAACAAGCTACAACTACAAGTACTCGATCAGAGTGCCTGTCACCGAATCTAATCCGCATCACTGTGATCCAATTATACCTCTTCTCCTCGCAATGACCATAATACCCTCAAAGATGATGGCTTCAACAATGCTCTCTCTCGTCTCTGCTGCTCTGCCACTACAAGAAAATCACAAGGGGAAGATGAATCTTGGCAGTTCTGATTGTAGTTCTTTTTTGAGGAAAGAGAAAAGAAACCCCTTCATGAAGACCAAGTCTTTTGGCCGGATAAATATGGCTATTGCAGTCAATACCTCTCGTTTTGAAGGTGTAACAATGGCCCCTCCTGATCCAATTCTTGGAGTTTCTGAGGCTTTCAGAGCAGACAATAGTGAGATGAAGCTCAACCTTGGAGTCGGGGCCTACCGAACAGAAGAACTCCAACCTTATGTGCTTAATGTTGTCAAGAAGGCAGAAAATCTTATGCTGGAGAGAGGAGAAAATAAAGAGTATCTTCCGATCGAAGGTTTGGCTGCATTTAATAAAGTTACAGCAGAGTTATTATTTGGAGCAGGCAATCCAGTAATTGAGCAACAAAGGGTTGCAACCGTTCAAGGTCTTTCTGGAACTGGTTCTCTTCGACTTGCTGCGGCCCTTATAGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCATCGCCAACATGGGGTAATCACAAGAATATTTTCAATGATGCTAGAGTTCCCTGGTCTGAATACCGATACTATGACCCAAAAACAGTTGGCTTGGATTTTGATGGGATGATATCCGATATAAAGGCAGCCCCAGAAGGATCTTTTGTGTTGCTTCATGGCTGTGCTCACAACCCAACTGGTATTGATCCAACTCCTGAACAGTGGGAAAAGATTGCTGATGTCATTCAAGAGAAGAATCACATTCCTTTCTTTGATGTTGCATACCAGGGATTTGCAAGTGGAAGCCTTGATGCAGATGCGTCATCCGTGAGATTGTTTGCTGCACGTGGTATGGAGCTTCTGGTTGCCCAATCATACAGTAAAAATCTGGGTCTTTATGCAGAAAGGATTGGGGCAATCAATGTGGTCTGCTCATCAGCAGATGCAGCAGCAAGGGTAAAGAGTCAGTTGAAAAGGATTGCTCGACCAATGTACTCAAATCCTCCTATTCATGGAGCTAGGATTGTTGCCAATGTTGTTGGTGATCCAGCTCTCTTCAATGAATGGAAAGAGGAGATGGAATTGATGGCTGGAAGGATAAAGAATGTGAGACAGAAACTATTTGACAGCCTCTCTGCAAAAGATAAGTGTGGAAAGGATTGGTCATTTATACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAGAGTGAGAATATGACAAATAAGTGGCATGTGTACATGACCAAGGACGGGAGGATCTCATTGGCTGGATTGTCTTTGGCCAAATGCGAATATCTTGCAGATGCCATCATTGATTCATTTCACTGTGTCAGTTGA 1563 0.4319 MYSASAIDKATEFCFLLCHETSYNYKYSIRVPVTESNPHHCDPIIPLLLAMTIIPSKMMASTMLSLVSAALPLQENHKGKMNLGSSDCSSFLRKEKRNPFMKTKSFGRINMAIAVNTSRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPIHGARIVANVVGDPALFNEWKEEMELMAGRIKNVRQKLFDSLSAKDKCGKDWSFILKQIGMFSFTGLSKVQSENMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSFHCVS* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0594 520 PANTHER ASPARTATE AMINOTRANSFERASE 114 517 IPR000796 GO:0006520|GO:0008483
Vvi4g0594 520 SUPERFAMILY PLP-dependent transferases 118 514 IPR015424 -
Vvi4g0594 520 CDD AAT_like 147 512 - -
Vvi4g0594 520 Gene3D Aspartate Aminotransferase, domain 1 123 512 IPR015422 GO:0003824
Vvi4g0594 520 Coils Coil 423 443 - -
Vvi4g0594 520 PRINTS Aspartate aminotransferase signature 293 312 IPR000796 GO:0006520|GO:0008483
Vvi4g0594 520 PRINTS Aspartate aminotransferase signature 324 336 IPR000796 GO:0006520|GO:0008483
Vvi4g0594 520 PRINTS Aspartate aminotransferase signature 461 479 IPR000796 GO:0006520|GO:0008483
Vvi4g0594 520 PRINTS Aspartate aminotransferase signature 392 417 IPR000796 GO:0006520|GO:0008483
Vvi4g0594 520 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 362 375 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi4g0594 520 Pfam Aminotransferase class I and II 146 512 IPR004839 GO:0009058|GO:0030170
Vvi4g0594 520 FunFam Aspartate aminotransferase 178 419 - -
Vvi4g0594 520 Gene3D - 178 419 IPR015421 GO:0003824
Vvi4g0594 520 FunFam Aspartate aminotransferase 408 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0594 Vvi-Chr4 5725900 5739296 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0594 K00811 - vvi:100242364 921.768