Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0589 ATGGTCTCCTCTACTGTCTTCCAATCGCCGCGTTTCTCTTTCTCCTCCGCCACCAAATCCACCGCCAAACCCATCACCACCACCACCGCCGCCGTCCATTTTCCCATCAGAGCCTGCTCATCCACCGAGGCGGCTGGCTCTATCAAAACCCACCACCGCCGCCCCGCGGATGAGAACATCCGCGACGAGGCCCGCCGCCAGTCCTCTGGAAACCACCATGGCTTCTCTGCTGTTTACGTCCCCTTCAATGCTGATCCCTCCTCCACGGAGTCCTACTCCCTCGACGAGATCGTCTACCGCTCGCGCTCCGGCGGCCTCCTCGACGTCAGCCATGATCTCGACGCTCTCAAGAAGTACGATGGCCAGTACTGGCGCTCCCTGTTCGACTCCCGCGTAGGAAAAACCACCTGGCCCTATGGCTCCGGCGTCTGGTCCAAGAAGGAGTGGGTACTTCCCGAGATCGACAGCGACGACATCGTCAGCGCCTTCGAAGGTAACTCCAACCTATTCTGGGCCGAACGTTTCGGTAAACAGTTTCTGGGTATGAACGACTTGTGGGTAAAACACTGTGGCATTAGCCATACCGGAAGTTTCAAGGATCTGGGCATGACCGTTTTGGTCAGCCAAGTTAACCGATTGCGAAAAATGAACCGCCCTGTTGTAGGCGTCGGTTGTGCCTCGACGGGGGACACCTCCGCTGCTCTCTCCGCCTACTGCGCGGCGGCGGGGATTCCCTCGATTGTGTTCCTACCCGCTAATCGGATTTCGATTGCGCAGCTGGTGCAGCCGATTGCGAATGGGGCGTTTGTGTTAAGCCTTGACACTGATTTTGATGGGTGTATGCAGTTGATCAGGGAGGTCACTGCTGAATTGCCGATTTACTTAGCAAATTCGTTGAATAGTTTGAGGCTTGAGGGGCAGAAGACGGCTGCAATCGAGATTTTGCAGCAGTTTGATTGGGAAGTGCCGGATTGGGTGATAGTTCCTGGTGGAAATCTTGGTAACATTTACGCCTTTTACAAAGGGTTTCACATGTGCAAAGAATTGGGACTTGTTGATAGGATTCCTAGGCTTGTTTGTGCTCAGGCTGCAAATGCCAATCCCCTTTATCTCCATTACAAGTCAGGTTGGGGAGAGTTTAAACCAGTGAAGGCCAACACTACTTTTGCCTCTGCCATTCAGATTGGAGATCCTGTTTCTATAGATAGGGCTGTTTATGCGCTTAAGAACTCAGATGGGATTGTGGAGGAAGCCACTGAGGAGGAGTTGATGGATGCCACGGCTAAAGCTGATTCCACTGGCATGTTCATATGTCCTCATACTGGGGTTGCATTGACTGCATTGTTTAAGCTTAGGGAGAGTGGGGTAATAAGGCCTACAGATAGGACTGTGGTGGTTAGCACGGCTCATGGTCTCAAGTTTACGCAGTCCAAGATTGATTATCACTCGAAAGACATTCCAGACATTGCTTGCCGGTTCGCTAACCCACCAGTGCAAGTGAAGGCTGATTTTGGGTCAGTTATGGATGTCTTGAAGAAGTACTTGTTAAGTAGGGACCCTAGGTGTTAG 1569 0.5239 MVSSTVFQSPRFSFSSATKSTAKPITTTTAAVHFPIRACSSTEAAGSIKTHHRRPADENIRDEARRQSSGNHHGFSAVYVPFNADPSSTESYSLDEIVYRSRSGGLLDVSHDLDALKKYDGQYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIDSDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNRPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPANRISIAQLVQPIANGAFVLSLDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFHMCKELGLVDRIPRLVCAQAANANPLYLHYKSGWGEFKPVKANTTFASAIQIGDPVSIDRAVYALKNSDGIVEEATEEELMDATAKADSTGMFICPHTGVALTALFKLRESGVIRPTDRTVVVSTAHGLKFTQSKIDYHSKDIPDIACRFANPPVQVKADFGSVMDVLKKYLLSRDPRC* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0589 522 CDD Thr-synth_1 144 474 - -
Vvi4g0589 522 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 189 203 IPR000634 GO:0006520|GO:0030170
Vvi4g0589 522 MobiDBLite consensus disorder prediction 43 72 - -
Vvi4g0589 522 NCBIfam threonine synthase 149 473 IPR004450 -
Vvi4g0589 522 MobiDBLite consensus disorder prediction 47 69 - -
Vvi4g0589 522 Gene3D - 53 275 IPR036052 -
Vvi4g0589 522 FunFam Threonine synthase 1, chloroplastic 259 519 - -
Vvi4g0589 522 PANTHER CYSTATHIONINE BETA-SYNTHASE 160 479 - -
Vvi4g0589 522 Gene3D - 276 515 IPR036052 -
Vvi4g0589 522 Pfam Pyridoxal-phosphate dependent enzyme 162 468 IPR001926 -
Vvi4g0589 522 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 60 514 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0589 Vvi-Chr4 5682710 5684278 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0589 K01733 - vvi:100257746 1035.79