Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0588 ATGTCAACTTATTTGGTGGCTGTTGTTGGTTTATTTGATCATATTGAAGATAAAACAGCTGATGGGATCAATGTTCGGGCATACTGTCCTATTGGTAAGGCTGATCAAGGGAAGTTTGCTTTGGATGTCACTGTAAAGACACTTGATATGTATACAGAGCACTTCTCAATGCCTTACCCACTCCCTAAACTGGATATGGCTGCAGTCCCATATTTCTCTGGTTGTGCTAAGGAGAATTTTGGCTTGATCATATTTTGTGAAATTGAACTGCTTCATCATGAATTGCATTCTGGAGCTTCCTGCAAGCATGCCAAGGGCAATGTGACGAACTACACACTTTACAAGTATATATCTGGCTATATCCATCATTGCATTATTGATGGCCTTGAGCATGACACCAAATACTATTACAAGATCGGAGAAGGTGGTTCTTCTCATGAATCCTGGTTTCAAACACCTCCAAAGATTGATCCAGATGCTCATTAA 486 0.4012 MSTYLVAVVGLFDHIEDKTADGINVRAYCPIGKADQGKFALDVTVKTLDMYTEHFSMPYPLPKLDMAAVPYFSGCAKENFGLIIFCEIELLHHELHSGASCKHAKGNVTNYTLYKYISGYIHHCIIDGLEHDTKYYYKIGEGGSSHESWFQTPPKIDPDAH* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0588 161 Gene3D - 92 156 - -
Vvi4g0588 161 SUPERFAMILY Purple acid phosphatase, N-terminal domain 97 154 IPR008963 GO:0003993|GO:0046872
Vvi4g0588 161 Pfam Peptidase family M1 domain 39 103 IPR014782 GO:0008237|GO:0008270
Vvi4g0588 161 Pfam Purple acid Phosphatase, N-terminal domain 100 152 IPR015914 GO:0003993|GO:0046872
Vvi4g0588 161 Gene3D - 12 91 - -
Vvi4g0588 161 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 19 96 - -
Vvi4g0588 161 PANTHER PROTEASE M1 ZINC METALLOPROTEASE 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0588 Vvi-Chr4 5676577 5681200 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0588 K08776 - vvi:100244572 165.236