Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0586 ATGTTGTGTAGAATGATGAGCCGGAAGAGGAAGACCGGTTCTGTTCCGGTTTATCTGAACGTCTACGATCTCACTCCGATGAATGGCTATGCGTATTGGCTAGGTCTTGGAATTTATCATTCTGGTGTTCAAGTTCATGGAGTTGAATATGCCTTTGGGGCTCACGAGCACCCAACGACAGGGATTTTTGAAGTGGAGCCAAAGCAGTGCCCTGGTTTCACATTCAGAAAATCGATACTGATAGGGAGAACGGATCTAGGCCCCAAAGATGTCCGTTCATTCATGGAGAAACTTGCAGAGGAATACTCGGGCAACACGTACAACCTTATCACCAGGAATTGCAACCACTTCTGCAATGATGTTTGCAATCGATTAACAGGGAAACCGATTCCTCGATGGGTTAACCGGCTCGCTAGGCTCGGTTTTCTCTGCAACTGTGTTCTTCCAGTGAGTTTGAATGAGACAAAGGTTCGGCAAGTTAGATCAGAAGATAGGGTTTGCCAAGGAGAGAAGAAGAAACTAAGAAGTCATTCAAGTAGGTTTGTATCTTCTTCTAACACTCCTCCTTCATTGTCACCTCACTCCTCAGGTTCAGCAAACAGAAGTTGTAGACAAAAACGTTGTCTTCCTCCATCTTCATCTTTGATACACAAGTCTTCACCTTCAACATTGAAGCTTTAA 681 0.4449 MLCRMMSRKRKTGSVPVYLNVYDLTPMNGYAYWLGLGIYHSGVQVHGVEYAFGAHEHPTTGIFEVEPKQCPGFTFRKSILIGRTDLGPKDVRSFMEKLAEEYSGNTYNLITRNCNHFCNDVCNRLTGKPIPRWVNRLARLGFLCNCVLPVSLNETKVRQVRSEDRVCQGEKKKLRSHSSRFVSSSNTPPSLSPHSSGSANRSCRQKRCLPPSSSLIHKSSPSTLKL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0586 226 MobiDBLite consensus disorder prediction 177 226 - -
Vvi4g0586 226 Pfam PPPDE putative peptidase domain 16 149 IPR008580 GO:0008233
Vvi4g0586 226 Gene3D PPPDE domains 10 166 IPR042266 -
Vvi4g0586 226 ProSiteProfiles PPPDE domain profile. 15 152 IPR008580 GO:0008233
Vvi4g0586 226 PANTHER DESUMOYLATING ISOPEPTIDASE 14 189 IPR008580 GO:0008233
Vvi4g0586 226 SMART DUF862_2a 15 153 IPR008580 GO:0008233
Vvi4g0586 226 MobiDBLite consensus disorder prediction 179 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0586 Vvi-Chr4 5653155 5655668 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0586 K22763 - vvi:100268022 455.677