Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0583 ATGGATCCGCCTAGCTCATGGGACGCCCTCCGGAAGCAGGCTAGAAAACTCGAAGCACAGTTGGATGAACAAATGCATTTATATCGCAAACTTGTTTCTATGAAAGTTGACGGTGATAAAGAGAAAGAGATTGATTCTGGAATAGATCAACTACTCAAACAGCTTCAGCAAGTAAATTCACATATGCAAGCTTGGGTATCATCTGGTGGGTCAGAAATATTTTCTCATACATTAACTCGCCATCAAGAAATCCTTCAAGATCTTACTCAGGAGTTTTATAGGCTTCGCTCTAGCTTTAGAGCTAAGAAGGAGCATGCGTCATTGCTTGAGGATTTCAGAGAGTTTGACAGGAGTAGGCTAGACTTGGAAGAAGGTGGTGGCTCTGAGCAGGCTTTACTTAAGGAACATGCATCTATCAGCAGAAGTACAGGACAGATGGATACTGTAATTTCTCAAGCACAAGCAACACTTGGGGCGCTTGTCTTTCAACGCTCAACCTTTGGGGGCATTAATTCAAAGCTTAGCAATGTCAGCAGCCGCCTCCCAACGGTGAATAACATCCTCTCGGCTATAAAGAGGAAAAAGTCTCTGGATACTATCATCCTTTCCCTTGTTGCTTCTGTCTGCACATTTCTCATTCTGATCTATTGGTTGACCAAATAA 663 0.4299 MDPPSSWDALRKQARKLEAQLDEQMHLYRKLVSMKVDGDKEKEIDSGIDQLLKQLQQVNSHMQAWVSSGGSEIFSHTLTRHQEILQDLTQEFYRLRSSFRAKKEHASLLEDFREFDRSRLDLEEGGGSEQALLKEHASISRSTGQMDTVISQAQATLGALVFQRSTFGGINSKLSNVSSRLPTVNNILSAIKRKKSLDTIILSLVASVCTFLILIYWLTK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0583 220 Pfam Snare region anchored in the vesicle membrane C-terminus 131 195 - -
Vvi4g0583 220 PANTHER GOS-28 SNARE- RELATED 2 218 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016020
Vvi4g0583 220 PIRSF Golgi_SNARE 1 219 IPR023601 GO:0000139|GO:0005801|GO:0006888|GO:0016020
Vvi4g0583 220 Coils Coil 7 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0583 Vvi-Chr4 5614461 5625438 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0583 K08495 - vvi:100250846 427.172