Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0578 ATGGCATCCAGAGCCTTCCGGCTCACCAGGTCTCTCCATAGGTACCGCTCCGTACTCGGACGGGCCTGTGAACTCTCCGCTCCGGCTGCGGTCGGCCGGTCCGTCTGTGTCCCTTTGATTCGCGTTGTAGGCGGAGGCGCAGAGAATCCTGTGTTTGTGAAGTCGGTGAACAATCTCGTTGGTAATGGGTTCGGTCGCAGGTTTTATTCGTCCTATGATAACGCTAATCAGATTAATCAGTCAGAGTTCACTGAGATGGCATGGGAAGGAATGGTTGATGCTGTTGATGCGGCACGACTTAGTAAACAACAAATTGTTGAATCTGAGCATTTAATGAAAGCTCTTTTGGAGCAGAAGGATGGCTTGGCTCGGAGAATATTTACAAAGGCTGGGCTTGACAATACATCAGTTTTGCAGGCTACAGATGACTTTATAGATCAACAACCCAAGGTGGTAGGTGATACTAGTGGCCCTATATTGGGTACAAATCTCAGGTCCCTATTGGAAAAGGCAAGAAGACACAAGAAAGAAATGGGAGATAACTTCTTGTCTGTAGAGCACCTATTGTTGGGATTCCTTTCAGATGCAAGGTTTGGGCGGCAACTATTTCAGAACCTCCAGCTCAGTGAAAAAGATTTGAAAGATGCTGTCTCAGCAGTTCGTGGAAATCAGAGAGTTACTGATCAAAACCCTGAAGGAAAATACCAAGCACTGGAAAAATATGGGAATGACTTGACTGAACTTGCTAGACGTGGAAAACTAGATCCTGTAATAGGACGAGATGATGAAATTCGGCGTTGTATCCAGATATTATCTAGGAGAACAAAGAACAACCCTGTCATTATTGGTGAGCCTGGTGTTGGAAAGACTGCAATTGCTGAAGGCTTAGCTCAAAGAATTGTGCGAGGGGATGTTCCTGAACCTTTGATGAACAGAAAGTTGATTTCACTGGATATGGGTTCATTGCTTGCTGGTGCTAAGTTCCGTGGAGATTTTGAGGAAAGACTGAAAGCAGTCCTTAAGGAAGTCACCGCTTCAAATGGGCAGATTATTTTATTTATTGATGAGATCCATACTGTAGTGGGTGCAGGGGCTGTGAGTGGGGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGCAGAGGTGAGCTCCGATGTATAGGGGCAACAACATTGAATGAATACAGAAAATACATTGAGAAGGATCCTGCCCTTGAGCGCAGGTTCCAGCAAGTGTTCTGTGGTCAGCCTTCAGTTGAAGACGCAATTTCCATTCTTCGTGGATTGCGTGAACGCTATGAGCTTCATCATGGTGTCAAAATATCAGACAGTGCCCTTGTATCAGCAGCAGTTCTTGCAGACCGATATATTACAGAGCGTTTTTTGCCTGACAAAGCCATTGATCTTGTGGATGAAGCGGCTGCAAAGCTGAAAATAGAGATAACTTCAAAGCCTACGGAGTTGGATGAGATAGATAGAGCTGTGATTAAACTAGAGATGGAGAAACTATCCCTGAAAAGTGACACTGATAAAGCATCCAGAGAAAGGTTAAGCAAGCTGGAAAATGATCTACTTTCACTTAAGCAGAAACAGAAAGATCTAACTGATCAATGGGAACAAGAAAAAGTTCTCATGACACGAATCCGATCTATTAAGGAGGAGATTGACAGGGTGAACCTGGAGATGGAATCTGCTGAACGTGAATATAATTTAAATCGTGCTGCTGAGCTCAAATATGGAACCTTAATTTCTCTTCAGCGGCAACTGGAAGAGGCTGAGAAGAACCTTGCTAATTATCGGAAATCCGGAAAGTCTTTGCTCCGGGAAGAAGTGACTGACCTTGATATTGCTGAAATTGTGAGTAAATGGACCGGTATACCCTTGTCAAACCTACAGCAATCAGAGAGGGACAAGTTAGTCTTGCTAGAACAAGTTCTGCACCAAAGGGTGGTTGGTCAGGAAAATGCTGTTAAATCAGTGGCTGATGCAATCCGGCGTTCAAGGGCAGGATTGTCAGACCCCATCCGGCCAATTGCAAGCTTCATGTTCATGGGTCCTACTGGGGTCGGTAAAACTGAGCTTGCAAAGGCTCTCGCAGGGTACCTTTTTAATACAGAAAATGCTCTTGTTAGAATTGACATGACTGAATACATGGAAAAGCACGCAGTCTCACGCTTGGTTGGTGCACCACCTGGTTATGTCGGATATGAAGAAGGTGGACAGCTCACCGAAGTAGTTCGCCGGAGACCTTATTCCGTGGTACTATTTGATGAGATTGAGAAGGCACATCACGATGTGTTCAACATTCTGTTACAGCTACTAGATGATGGCAGGATAACTGATTCTCAGGGAAGAACAGTTAGTTTTACAAATTGTGTAGTGATCATGACATCAAATATCGGGTCCCACTATATCCTAGAAACACTTCAGAGCACAGATAAGAAGGAAGCAGTTTATGAGATCATGAAAAAACAAGTTGTTGAGTTGGCCAGACAAACATTCCGACCAGAGTTCATGAATCGAATCGATGAATATATTGTCTTCCAGCCTTTGGACTCCAAAGAAATCAGCAAAATTGTTGAGATACAGATGAACCGACTAAGAGAGAGGCTGAAACAGAAGAAAATCGATCTCCATTACACAAAGGAGGCTGTTGAACTTTTGGGGACGCAAGGCTTTGACCCAAATTTCGGTGCAAGGCCAGTCAAGAGGGTAATACAGCAGATGGTTGAAAACGAAATAGCAATGGGAATTCTGAGAGGGGATTTCAAGGAGGACGAGTCGATTATCATCGATGCTGACATGTCAGCCAACATTCCTCCCCATAAGAGATTGCTGATCAAGAAGTTGGAGAGTAGTTCTCCCATGGACGCCATGGTTGCCTGA 2889 0.4451 MASRAFRLTRSLHRYRSVLGRACELSAPAAVGRSVCVPLIRVVGGGAENPVFVKSVNNLVGNGFGRRFYSSYDNANQINQSEFTEMAWEGMVDAVDAARLSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDDFIDQQPKVVGDTSGPILGTNLRSLLEKARRHKKEMGDNFLSVEHLLLGFLSDARFGRQLFQNLQLSEKDLKDAVSAVRGNQRVTDQNPEGKYQALEKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGAVSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCGQPSVEDAISILRGLRERYELHHGVKISDSALVSAAVLADRYITERFLPDKAIDLVDEAAAKLKIEITSKPTELDEIDRAVIKLEMEKLSLKSDTDKASRERLSKLENDLLSLKQKQKDLTDQWEQEKVLMTRIRSIKEEIDRVNLEMESAEREYNLNRAAELKYGTLISLQRQLEEAEKNLANYRKSGKSLLREEVTDLDIAEIVSKWTGIPLSNLQQSERDKLVLLEQVLHQRVVGQENAVKSVADAIRRSRAGLSDPIRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMTEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLQSTDKKEAVYEIMKKQVVELARQTFRPEFMNRIDEYIVFQPLDSKEISKIVEIQMNRLRERLKQKKIDLHYTKEAVELLGTQGFDPNFGARPVKRVIQQMVENEIAMGILRGDFKEDESIIIDADMSANIPPHKRLLIKKLESSSPMDAMVA* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0578 962 SMART AAA_5 275 419 IPR003593 GO:0016887
Vvi4g0578 962 SMART AAA_5 678 832 IPR003593 GO:0016887
Vvi4g0578 962 FunFam ATP-dependent chaperone ClpB 420 625 - -
Vvi4g0578 962 CDD AAA 258 418 - -
Vvi4g0578 962 Gene3D - 630 850 IPR027417 -
Vvi4g0578 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 932 IPR027417 -
Vvi4g0578 962 Pfam AAA lid domain 419 521 IPR041546 -
Vvi4g0578 962 Coils Coil 549 576 - -
Vvi4g0578 962 FunFam ATP-dependent chaperone ClpB 852 940 - -
Vvi4g0578 962 FunFam Chaperone clpB 1, putative 226 419 - -
Vvi4g0578 962 ProSiteProfiles Clp repeat (R) domain profile. 78 223 IPR004176 -
Vvi4g0578 962 Pfam AAA domain (Cdc48 subfamily) 677 845 IPR003959 GO:0005524|GO:0016887
Vvi4g0578 962 FunFam Chaperone protein ClpB3, chloroplastic 79 225 - -
Vvi4g0578 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 626 IPR027417 -
Vvi4g0578 962 SUPERFAMILY Double Clp-N motif 82 233 IPR036628 -
Vvi4g0578 962 Coils Coil 511 538 - -
Vvi4g0578 962 Gene3D - 852 944 - -
Vvi4g0578 962 Pfam C-terminal, D2-small domain, of ClpB protein 852 931 IPR019489 -
Vvi4g0578 962 Coils Coil 583 610 - -
Vvi4g0578 962 Gene3D - 78 225 IPR036628 -
Vvi4g0578 962 NCBIfam ATP-dependent chaperone ClpB 83 935 IPR017730 GO:0005737|GO:0009408|GO:0042026
Vvi4g0578 962 Pfam ATPase family associated with various cellular activities (AAA) 281 413 IPR003959 GO:0005524|GO:0016887
Vvi4g0578 962 SMART ClpB_D2_small_2 852 948 IPR019489 -
Vvi4g0578 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 789 803 IPR001270 GO:0005524
Vvi4g0578 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 756 774 IPR001270 GO:0005524
Vvi4g0578 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 682 700 IPR001270 GO:0005524
Vvi4g0578 962 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 727 745 IPR001270 GO:0005524
Vvi4g0578 962 Gene3D - 420 625 IPR027417 -
Vvi4g0578 962 Gene3D - 226 419 IPR027417 -
Vvi4g0578 962 FunFam ATP-dependent Clp protease subunit 631 850 - -
Vvi4g0578 962 Pfam Clp amino terminal domain, pathogenicity island component 94 145 IPR004176 -
Vvi4g0578 962 Pfam Clp amino terminal domain, pathogenicity island component 172 222 IPR004176 -
Vvi4g0578 962 ProSitePatterns Chaperonins clpA/B signature 2. 712 730 IPR028299 -
Vvi4g0578 962 PANTHER ATP-DEPENDENT CLP PROTEASE 84 953 - -
Vvi4g0578 962 CDD RecA-like_ClpB_Hsp104-like 639 849 - -
Vvi4g0578 962 ProSitePatterns Chaperonins clpA/B signature 1. 371 383 IPR018368 GO:0005524
Vvi4g0578 962 Coils Coil 858 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0578 Vvi-Chr4 5486284 5510310 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0578 K03695 - vvi:100247399 1845.86