Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0576 ATGTCAATTTCACCCAAGACCGAATCAGTTCTAATTCGTGAGGTCTGGAATGAGAATCTCGAGAGTGAATTTGCCTTAATTCGTGAAATCGTGGATAAATATCCTTATATTGCAATGGACACTGAGTTTCCAGGCGTGGTTCTTCGTCCCATGGGGACTTTCAAGAACATAAATGATTATAATTATCAAACTTTGAAGGATAATGTTGATATGTTGAAGCTGATCCAATTGGGTCTCACATTTTCGGATGCAAATGGGAATCTTCCGACTTGTGGCACTGACAAGTTGTGCATTTGGCAATTCAATTTCCGGGAATTTGACGTGACTGAAGATGTCTTCGCAAGTGACTCGATTCAGATGCTGCAAGAGTGCGGTATGGATTTTAAGAAGAACAATGAAAAGGGTATTGACGTGAATCAGTTTGGTGAGCTTCTGATGTCATCTGGGATTGTGTTGAATGATAATGTGAGCTGGGTTACTTTCCACAGTGGTTATGATTTTGGGTATTTGCTTAAGCTGTTGACCCGTCGGAGCTTGCCTGGTACACAAGCAGGTTTCTTTGATCTGATCAACATGTATTTTCCCATGGTTTATGATATTAAGCATTTGATGAAGTTCTGCAATAGCTTGCATGGTGGGTTGAATAAGCTTGCAGAGTTATTGGAAGTTGAGAGAGTTGGTATTTGTCATCAAGCAGGGTCGGACAGTTTGCTTACTTCTTGCACATTCAGGAAGTTGAGAGACAGCTTCTTCAATGGCTCAACAGAGAAGTATGCTGGTGTCTTGTATGGTCTTGGTGTCGAGACTGGACAGACTAATTGA 822 0.4124 MSISPKTESVLIREVWNENLESEFALIREIVDKYPYIAMDTEFPGVVLRPMGTFKNINDYNYQTLKDNVDMLKLIQLGLTFSDANGNLPTCGTDKLCIWQFNFREFDVTEDVFASDSIQMLQECGMDFKKNNEKGIDVNQFGELLMSSGIVLNDNVSWVTFHSGYDFGYLLKLLTRRSLPGTQAGFFDLINMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTSCTFRKLRDSFFNGSTEKYAGVLYGLGVETGQTN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0576 273 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Vvi4g0576 273 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
Vvi4g0576 273 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 266 IPR039637 GO:0004535|GO:0030014
Vvi4g0576 273 FunFam Putative CCR4-associated factor 1 7 2 269 - -
Vvi4g0576 273 Gene3D - 2 268 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0576 Vvi-Chr4 5460029 5460850 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0576 K12581 - vvi:100255985 560.066