Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0562 ATGGAGACTAACTATGGAACGCTTGTTTCGCTCCTTTCTTGTCTGTGCGTTGCGTCGGTGGTTGTGGTTTGCATAGTTTCGGGCCATTATAGTCAGTCCATAAAGTTTTCAGGTGCCGAACCAGGAGATTCAGTGGCCACGATCGAGTTGCAGACCAAGGTCACTGCCTCTCATGAGGTCCGAGCTGTTTTCTCCTCTCAACCTCCTGCTTTTTACGTCAATCGACTCAGAAACCATACTCTCATTAGAAAAATCAAGAAACGGACAAGATATCAAGGGCAGGAAGAAGGACTCGCTCGAGCGCGTGCTTCAATTCGCAAGGCGTTCTCGAATCTAAACCGATCGTCGGAGATCGGCGGAGAAGATAATAATGAGGTCCCCACCGGTGACGTGTATCGTAACGCCGGCGCATTTTATCAGAGCTACGTGGAGATGGAGAAAAGGTTGAAGGTGTACGTGTATGAAGAAGGGGAGGTGCCCATGATCCACGATGGACCGTGTAAGGACATATATACGATAGAAGGAAGGTTCATACACGAGATCGAGCATGGAGATGGGAAGTTCAGAACCAGAGATGCTGAGCGTGCTCACGTTTATTTCATGCCCTTCAGTGTTACGTGGATGGTGAAGTACCTCTACAAGCCTCTCACCTACAACCTCACTCCCCTTCGACAATTCGTGTCTGATTACGTGAGCGTCATCTCTACCAAGTACCCCTTTTGGAATACAACCCAAGGGGCTGATCACTTCATGCTTGCCTGTCATGATTGGGGTCCTCACGCATCACGGGGCCACCCAGTTCTATACAACACATCAATCCGGGTGTTATGCAATGCCAACACCTCCGAAGGGTTCAACCCCCAAAAGGACGTGAGCTTGCCCGAAATCCACCTCTACGGTGGCAACGTAAACCCCAAGCTCCTCTCCCCTCCACCCCCCAACAGCCCACGTCCATTTTTGGCATTCTTTGCTGGTGGGCTTCACGGCCCAATTAGGCCCATCCTCATCCAACACTGGATGGGCCGTGACACTGACCTCCGCGTCTATGAATACCTCCCCAAGGACATGGACTACTACTCGCTCATGCTCCAATCCAAGTACTGCTTGTGCCCCAGCGGCCACGAGGTGGCCAGCCCCAGAATAGTCGAGGCCATTTACTCCGAGTGTGTTCCTGTGATACTCTCCGATCACTATGTTTTGCCATTCAGCGATGTGTTGAGATGGGAAGCATTCTCTGTTAAGGTGGAGGCATCGGAGATCCCGAGGTTAAAGGAGGTGCTGCAAGCAATATCTGAGGAAAAGTATACGAGGCTCAAGGAGGGTGTGAGAGCTGTTAGGAGACATTTTGAGCTGAACCAGCCTGCCAAGAGATTTGATGTGTTTCACATGATTCTACATTCTGTTTGGCTGAGGAGAATAAACCTAAAACTTGGTTAG 1437 0.5038 METNYGTLVSLLSCLCVASVVVVCIVSGHYSQSIKFSGAEPGDSVATIELQTKVTASHEVRAVFSSQPPAFYVNRLRNHTLIRKIKKRTRYQGQEEGLARARASIRKAFSNLNRSSEIGGEDNNEVPTGDVYRNAGAFYQSYVEMEKRLKVYVYEEGEVPMIHDGPCKDIYTIEGRFIHEIEHGDGKFRTRDAERAHVYFMPFSVTWMVKYLYKPLTYNLTPLRQFVSDYVSVISTKYPFWNTTQGADHFMLACHDWGPHASRGHPVLYNTSIRVLCNANTSEGFNPQKDVSLPEIHLYGGNVNPKLLSPPPPNSPRPFLAFFAGGLHGPIRPILIQHWMGRDTDLRVYEYLPKDMDYYSLMLQSKYCLCPSGHEVASPRIVEAIYSECVPVILSDHYVLPFSDVLRWEAFSVKVEASEIPRLKEVLQAISEEKYTRLKEGVRAVRRHFELNQPAKRFDVFHMILHSVWLRRINLKLG* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0562 478 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 24 468 IPR004263 GO:0006486|GO:0016757
Vvi4g0562 478 Pfam Exostosin family 146 430 IPR040911 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0562 Vvi-Chr4 5206353 5210218 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0562 - - vvi:100252473 944.11