Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0561 ATGTCAACCATGAACAAGGTTTGTTCGCCTTACTTTGATCCCGAGTTTGACGAGCTCCCAGAGAGAATATTCGGCCCAACTTGCAGGGTCTGCATCGACAATGAGAGCTTGGAAGATTGCACACTGGTAAAAGTGAACAGCATAAACAAGCAGGGCATTCTCCTGGAAGTGGTGAAAGTGTTAACAGACATGAATCTCACCATCTCCAAGAGCTACATTTCATCTGATGCAGGATGGTTCATGTTTGTTTTTCACGTTAGGGATGAGCATGGCAACAAACTCACGGATCAGAGAGTCATTAACTATATCCAGCAGGCTATAGGGACAACTAGGGAGATCCCAAACTCCCTGACCTATGTCAACAACGTTATAGAATCCGAACCTGCGAGCGAGCACACAGCCATTGAAATGAGTGGAGCAGACAGGCCAGGTCTGTTTTCTGAAATATCGGCTGCTCTAGCTGATCTCCAGGTCAACATTGTGGAAGCTCATGCATGGACCCACAATGAACGCCTGGCTTGTGTCGCCTACATTACTGATCAATCAACGGACAGCCGAATTGAAGATCCCCATCGCCTTGCCAAAATCGAAAACCACCTTGCCACAGTACTTGGGGCAGCCAATATCAGCCGCGCCAACCATCAAGAAGTCAAAGGCGCTGATCTCCATGTAGGGGAAGCCACCACCACCTGTGCGGAACGCCGGCTGCATCAGCTCATGCTTTCCGTCGAGGATTTCGAAGGGCCGTCTGCGCCCACAACAAGTTCATCGGAGACGCCATTGGGATTGGACGAAGATGATGATGAAGGAAGCAAAACGATTGTGTCCATTGAGAGCTGCAACGAAAGGGGCTACTCCATTGTGAGCATAGAATGCAAGGATCGGCTGAGGCTCATGTTCGACGTAGTCTGCACGATTACTGATATGCAGTACCTGATTTTCCATGGTTCCACAGCTTCCCATGGAGGTTATGCAATGCAGGAGTACTTTATCAGACATATAGATGGGTGCACTGTAAACAGTGAGGGTGAAAAGGAACATGTTGTGAAATGCCTAGAGGCTGCTATAGAGCGTCGAGTCTGTGAGGGGGTCCGGCTGGAGCTATGTGCAAATAATAGGTTGGGGCTGCTGTCTGATATAACTCGGGTTCTGCGAGAGAACGGGCTTGCCGTAGTTCGGGCAGATGTGGAAACGCAGGGAGAGAAAGCGGTGAATGCTTTCTACGTGAAAGACCTTTCAGGCAATGATGTAGACACGGAGTTCACAGAGCCAAAGAAGAAAGAGAAGTTCATAGAGTCAGTGAAGAAAGAGATGGGTCCAATAGATCTTGCAGTGAAGAAAGAGATAACATCAAGCCCAAGCTCTCCTGATCATAGGCCCCGCTTCTCTGTTGCAGACATGGTGAAATCTCATGTTGATCGCCTGTCCAATAATTTCATTCCCATCAAGAACTGA 1455 0.4852 MSTMNKVCSPYFDPEFDELPERIFGPTCRVCIDNESLEDCTLVKVNSINKQGILLEVVKVLTDMNLTISKSYISSDAGWFMFVFHVRDEHGNKLTDQRVINYIQQAIGTTREIPNSLTYVNNVIESEPASEHTAIEMSGADRPGLFSEISAALADLQVNIVEAHAWTHNERLACVAYITDQSTDSRIEDPHRLAKIENHLATVLGAANISRANHQEVKGADLHVGEATTTCAERRLHQLMLSVEDFEGPSAPTTSSSETPLGLDEDDDEGSKTIVSIESCNERGYSIVSIECKDRLRLMFDVVCTITDMQYLIFHGSTASHGGYAMQEYFIRHIDGCTVNSEGEKEHVVKCLEAAIERRVCEGVRLELCANNRLGLLSDITRVLRENGLAVVRADVETQGEKAVNAFYVKDLSGNDVDTEFTEPKKKEKFIESVKKEMGPIDLAVKKEITSSPSSPDHRPRFSVADMVKSHVDRLSNNFIPIKN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0561 484 Pfam ACT domain 134 197 IPR002912 -
Vvi4g0561 484 CDD ACT_ACR_3 285 359 - -
Vvi4g0561 484 SUPERFAMILY ACT-like 129 206 IPR045865 -
Vvi4g0561 484 ProSiteProfiles ACT domain profile. 365 452 IPR002912 -
Vvi4g0561 484 ProSiteProfiles ACT domain profile. 134 214 IPR002912 -
Vvi4g0561 484 MobiDBLite consensus disorder prediction 246 269 - -
Vvi4g0561 484 SUPERFAMILY ACT-like 362 411 IPR045865 -
Vvi4g0561 484 SUPERFAMILY ACT-like 38 107 IPR045865 -
Vvi4g0561 484 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 13 446 IPR040217 -
Vvi4g0561 484 CDD ACT_ACR_2 133 204 - -
Vvi4g0561 484 Gene3D - 132 219 - -
Vvi4g0561 484 CDD ACT_ACR_1 40 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0561 Vvi-Chr4 5201795 5204172 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0561 - - vvi:100852414 944.495