Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0560 ATGAAGCAGCATCACACTTCCTCAGAAGCAGTATCCTCATCGTCAACGATATCATCGTCGACAGTACCATCATCATCGGAGCAATCGCAGCCGCCCATCGCCACTCCGTCGCCGAGTCCATCAATGGGCGACGATCCCTCCCTGGCCGCCTCTAGAGACGGCCACGGCCAAGAATCGGTGACCGTCGATCGCCGCACCGACTTCTCCGCCGTCTGCAAATGGACGGTTCACAATTTCCCCAAAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAAGTCGGTGGCTTCGATTGTCGTCTCCTAATCTACCCTAAAGGCGACTCTCAGGCTTTGCCTGGCTACATCAGCGTCTATCTCCAAATCATGGACCCTCGCGGCTCATCGTCCTCCAAATGGGACTGCTTCGCCAGCTACCGCCTCGCAATCGTTAATCACGCCGACGATTCCAAGTCTATCCACCGCGATTCGTGGCACCGGTTCTCCAGTAAGAAGAAATCGCACGGTTGGTGCGATTTCACCCCCTCCACTACGCTTTTCGATTCCAAGTCTGGTTATTTGTTCAACAATGACTCCGTCCTCATAACCGCCGATATTCTTATATTGAATGAATCCGTAAATTTCACTCGCGATAATAATGAATTGCAATCGGCCTCATCCATGGCTTCCATGGTTGTGGCCGGTCCGGTGTCGGATGTGTTGAGTGGAAAATTTACTTGGAAAGTACATAATTTTAGTCTATTCAAAGAAATGATAAAGACCCAAAAGATAATGAGTCCCGTTTTCCCAGCAGGAGAGTGTAATCTTAGGATTAGTGTCTACCAAAGTTCGGTTAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGTAAGGATACGGAGAAGGCAGTGGTGTCTGACCGGAGTTGTTGGTGTTTGTTTCGGATGTCAGTTTTGAACCAGAAACCGGGGTTGAATCACATGCATAGGGACTCGTATGGTAGGTTTGCAGCGGATAATAAGAGTGGGGACAATACTAGTTTGGGGTGGAATGATTATATGAAAATGTCAGATTTTATTGGATCAGATTCAGGGTTTTTGGTTGATGATACTGCAGTCTTTAGTACATCCTTTCATGTGATTAAGGAGTTCAGCAGTTTTTCAAAGAATGGGGGTTTGATTGGGGTAAGGGGTGGAAGTGGTGGCACACGGAAGTCTGATGGGCATTTGGGGAAATTCACTTGGAGGATTGAGAACTTCACAAGGTTGAAAGATCTTCTAAAGAAGAGGAAGATTACGGGTTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGGAATCGTGATTGTCGCCTGATTGTTTATCCTCGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTCTTTCTCGAGGTTACAGATTCACGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGCCACCGATTGTCGGTTGTGAACCAAAGGATGGAAGACAAGTCTGTTACCAAGGAATCTCAAAACCGCTACTCAAAAGCTGCAAAGGACTGGGGCTGGCGAGAATTTGTGACACTCACTAGTCTCTTTGATCAAGATTCTGGATTTCTTGTTCAGGACACTGTTGTGTTCTCTGCAGAGGTTCTTATTTTGAAAGAGACATCCACAATGCTGGACTTGACTGATCAAGACAGTGAGTCAAGCAACAGTGGTTCCCAGATTGATAAGATTGGGAAAAGAAGTTCATTTACATGGAGAGTGGAAAATTTCATGTCCTTCAAGGAAATAATGGAAACTCGAAAAATTTTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGAATTGGTGTCTATGAATCCTTTGACACCATATGCATATACCTCGAGAGTGATCAATCAGTTGGGAGTGATCCTGATAAAAATTTTTGGGTCAGATACAGGATGGCTGTGGTGAATCAAAAGAACCCTGCCAAAACTGTGTGGAAGGAGTCCTCTATTTGCACAAAGACATGGAATAATTCCGTTCTTCAATTCATGAAGGTATCGGATATGCTGGAGGCAGATGCAGGATTTCTTGTACGTGACACAGTTGTTTTTGTTTGTGAAATCTTGGATTGCTGTCCGTGGTTCGAATTTTCAGACCTAGAGGTTTTGGCTTCCGAGGATGACCAGGATGCTTTAACCACTGACCCTGATGAACTCATTGATTCAGAAGACAGTGAAGGAATAAGTGGAGATGAAGAAGACATCTTTAGAAACCTTCTTTCCAGAGCTGGCTTTCACCTCACATACGGAGATAATCCTGCACAACCACAGGTCACTTTGAGAGAAAAGCTTCTAATGGATGCTGGTGCCATAGCTGGTTTCCTGACTGGACTTCGTGTTTATCTCGATGACCCTGCTAAGGTAAAGCGCTTGCTTCTTCCAACCAAACTCTCTGGCAGCAATGATGGAAAGAAAGTCACAAAGACTGATGAATCTTCCCCCAGTTTGATGAACTTGTTGATGGGAGTTAAAGTGTTGCAGCAGGCGATTATTGATTTACTTTTGGATATAATGGTTGAATGTTGCCAACCTTCAGAAGGAAATTCTAATGATGATTCTTCTGATGAAAACTCAAAACTTTCTCCTGGTGGCAGTGGAGCTGTCAGCCCACTGGAATCAGATCGGGAAAATGGAGCAACAGAATCTGCAGAATTCCCTGTATATGAGAGATTGGATTCTGGGGTATATGAAAGTACCAATGTGTCTGCTGTACAAAGCTCAGACATGAATGGTACTGTTGTACCTGAAAAAGCTGTTCCTGGACAGCCTATAAGTCCACCAGAGACATCTGCAGGGGGTTCCATCGAAAATGCTTCCCTTCGCTCGAAGACCAAGTGGCCAGAGCAATCTGAGGAACTATTGGGATTGATTGTGAATTCACTGAGAGCCCTAGATGGCGCGGTTCCACAAGGTTGTCCCGAGCCAAGGCGACGGCCCCAATCTGCACAAAAGATTGCTCTTGTATTGGATAAAGCTCCCAAGCACCTGCAACCAGACCTAGTTGCTTTGGTACCCAAATTGGTTGAGCACTCAGAGCATCCACTTGCTGCTTGTGCACTTCTGGATCGACTTCAGAAGCCAGATGCTGAACCTGCATTGCGGATACCGGTTTTCGGGGCTCTTAGTCAACTGGAGTGTGGCAGTGAAGTTTGGGAACGCATTTTATTCCAATCTTTTGAGCTTTTGAGTGACTCAAATGATGAACCACTGGCAGCAACCATAAATTTCATCTTTAAAGCAGCATCTCAATGCCAACATCTTCCTGAAGCAGTCAGATCTATACGTGTTAAGCTAAAACATCTAGGTGCAGAAGTGTCTCCTTGTGTCCTTGATTTTTTGAATAAAACTGTAAATAGTTGGGGAGATGTTGCTGAAACAATACTGAGAGATATTGATTGTGACGATGATTTTGGTGACAATTGCTCAACAATTCCTTGTGGGCTTTTCTTATTTGGTGAAAACGGGCCTACTTCCGAAAGGTTGCATGCAATTGATGAACAGGCTTTCTGTGCTACTCGGCATTTTTCAGATATCTATCTCCTGATTGAGATGTTATCGATACCTTGCCTTGCTGTTGAAGCTTCCCAAACATTTGAGAGAGCTGTAGCTCGAGGGGCCTTTGTGGCCCAGTCAGTCGCCATGGTCTTGGAAAGTCGCCTTGCTCAAAGATTGAATTTTAATTCCAGATTTGTTGCTGAAAGTTTTCAGCACACAGATGTTGTAGTAGAAGGAGAAACCAATGAGCAGCTAAGAGCTCAACGAGATGATTTTTCTTCAGTTCTCGGTCTTGCTGAGACATTGGCTCTCTCTCGAGATCCTCGTGTAAAGGGATTTGTCAAGGTGCTTTACACTATATTGTTTAAATGGTATGCTGATGAATCATACAGAGGCAGGATGCTTAAGAGACTTGTTGATCGCGCCACCAGCACTACAGACAGTAGTCGTGAAATAGATTTAGAATTGGAAATTTTGGTTATTTTGGTTTGTGAAGAACAAGAAATTGTTAGACCAGTTCTGAGCATGATGCGTGAGGTTGCTGAACTTGCAAATGTTGATCGGGCAGCTCTTTGGCATCAATTGTGCACCAGTGAAGATGAAATTATTCGCATGCGTGAAGAGAGGAAAGCTGAAATTTCCAATTTGGTTAAAGAAAAAGCTATCATATCACAAAGGCTTAGTGAATCTGAGGCTACCAGCAACCGTCTTAAGTCTGAAATGAGGGCTGAGGCGGATCGGTTTGCTCGAGAAAAAAAGGAGCTTTCTGAACAGATACAAGAAGTTGAAAGTCAGCTAGAATGGCTTCGATCAGAGCGGGATGAAGAAATTACAAAGCTAACTTCAGAGAAGAAAGTTCTTCAGGATCGCCTTCATGATGCAGAGGCACAACTTTCACAGTTGAAGTCTCGAAAACGCGATGAATTGAAGAGAGTAGTGAAGGAAAAAAATGCTCTTGCTGAAAGGTTGAAGAGTGCTGAAGCTGCAAGGAAAAGGTTTGATGAAGAACTAAAACGTTATGCAACAGAGAATGTGACAAGAGAGGAAATTCGACAGTCACTTGAAGATGAAGTTCGACGGTTGACACAAACAGTTGGCCAAACTGAAGGAGAAAAGCGGGAGAAGGAAGAGCAGGTTGCTCGATGTGAAGCATACATTGATGGAATGGAATCAAAATTGCAAGCCTGCCAGCAATATATTCACACCCTCGAGGCTTCGCTCCAGGAGGAAATGTCCCGACATGCTCCTCTATATGGTGCTGGTTTGGAAGCACTATCAATGAAGGAACTGGAGACATTGGCCCGTATCCATGAAGAAGGGCTTAGGCAGATTCATGCCATCCAACAGCACAAAGGGAGTCCAGCTGGCAGTCCTCTTGTGAGCCCTCACACCCTTCAGCACTCCCATGGGCTGTACCCTCCTGCACCACCTCCAATGGCTGTTGGATTGCCCCCTTCTCTCATTCCAAATGGTGTTGGGATCCACAGCAATGGGCATGTGAATGGGGCAGTTGGATCCTGGTTCAACCATAATTGA 5052 0.4499 MKQHHTSSEAVSSSSTISSSTVPSSSEQSQPPIATPSPSPSMGDDPSLAASRDGHGQESVTVDRRTDFSAVCKWTVHNFPKIKARALWSKYFEVGGFDCRLLIYPKGDSQALPGYISVYLQIMDPRGSSSSKWDCFASYRLAIVNHADDSKSIHRDSWHRFSSKKKSHGWCDFTPSTTLFDSKSGYLFNNDSVLITADILILNESVNFTRDNNELQSASSMASMVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTEKAVVSDRSCWCLFRMSVLNQKPGLNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGSDSGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIGVRGGSGGTRKSDGHLGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSTMLDLTDQDSESSNSGSQIDKIGKRSSFTWRVENFMSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPAQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSNDGKKVTKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGNSNDDSSDENSKLSPGGSGAVSPLESDRENGATESAEFPVYERLDSGVYESTNVSAVQSSDMNGTVVPEKAVPGQPISPPETSAGGSIENASLRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQPDLVALVPKLVEHSEHPLAACALLDRLQKPDAEPALRIPVFGALSQLECGSEVWERILFQSFELLSDSNDEPLAATINFIFKAASQCQHLPEAVRSIRVKLKHLGAEVSPCVLDFLNKTVNSWGDVAETILRDIDCDDDFGDNCSTIPCGLFLFGENGPTSERLHAIDEQAFCATRHFSDIYLLIEMLSIPCLAVEASQTFERAVARGAFVAQSVAMVLESRLAQRLNFNSRFVAESFQHTDVVVEGETNEQLRAQRDDFSSVLGLAETLALSRDPRVKGFVKVLYTILFKWYADESYRGRMLKRLVDRATSTTDSSREIDLELEILVILVCEEQEIVRPVLSMMREVAELANVDRAALWHQLCTSEDEIIRMREERKAEISNLVKEKAIISQRLSESEATSNRLKSEMRAEADRFAREKKELSEQIQEVESQLEWLRSERDEEITKLTSEKKVLQDRLHDAEAQLSQLKSRKRDELKRVVKEKNALAERLKSAEAARKRFDEELKRYATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLARIHEEGLRQIHAIQQHKGSPAGSPLVSPHTLQHSHGLYPPAPPPMAVGLPPSLIPNGVGIHSNGHVNGAVGSWFNHN* 1684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0560 1683 SUPERFAMILY TRAF domain-like 572 696 - -
Vvi4g0560 1683 Coils Coil 1410 1515 - -
Vvi4g0560 1683 MobiDBLite consensus disorder prediction 1 32 - -
Vvi4g0560 1683 MobiDBLite consensus disorder prediction 1 61 - -
Vvi4g0560 1683 SUPERFAMILY TRAF domain-like 404 546 - -
Vvi4g0560 1683 Coils Coil 1523 1550 - -
Vvi4g0560 1683 ProSiteProfiles MATH/TRAF domain profile. 403 539 IPR002083 GO:0005515
Vvi4g0560 1683 SMART math_3 573 676 IPR002083 GO:0005515
Vvi4g0560 1683 SMART math_3 408 520 IPR002083 GO:0005515
Vvi4g0560 1683 SMART math_3 71 179 IPR002083 GO:0005515
Vvi4g0560 1683 SMART math_3 240 352 IPR002083 GO:0005515
Vvi4g0560 1683 ProSiteProfiles MATH/TRAF domain profile. 571 695 IPR002083 GO:0005515
Vvi4g0560 1683 SUPERFAMILY TRAF domain-like 70 207 - -
Vvi4g0560 1683 CDD MATH 573 695 IPR002083 GO:0005515
Vvi4g0560 1683 PANTHER TRAF-LIKE FAMILY PROTEIN 19 1682 - -
Vvi4g0560 1683 Gene3D - 1440 1634 - -
Vvi4g0560 1683 SUPERFAMILY TRAF domain-like 233 377 - -
Vvi4g0560 1683 MobiDBLite consensus disorder prediction 852 871 - -
Vvi4g0560 1683 CDD MATH 404 539 IPR002083 GO:0005515
Vvi4g0560 1683 CDD MATH 74 199 IPR002083 GO:0005515
Vvi4g0560 1683 MobiDBLite consensus disorder prediction 852 893 - -
Vvi4g0560 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 231 377 IPR008974 GO:0005515
Vvi4g0560 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 396 548 IPR008974 GO:0005515
Vvi4g0560 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 556 697 IPR008974 GO:0005515
Vvi4g0560 1683 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 55 206 IPR008974 GO:0005515
Vvi4g0560 1683 Pfam MATH domain 583 691 IPR002083 GO:0005515
Vvi4g0560 1683 Pfam MATH domain 77 201 IPR002083 GO:0005515
Vvi4g0560 1683 Pfam MATH domain 435 541 IPR002083 GO:0005515
Vvi4g0560 1683 CDD MATH 236 367 IPR002083 GO:0005515
Vvi4g0560 1683 ProSiteProfiles MATH/TRAF domain profile. 69 199 IPR002083 GO:0005515
Vvi4g0560 1683 ProSiteProfiles MATH/TRAF domain profile. 235 371 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0560 Vvi-Chr4 5180683 5200167 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0560 - - vvi:100259525 3222.57