Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0556 ATGACGATTCTGTATGCGTTGGTGGCGAGGGGATCCCTGGTGTTGGCGGAGTTCAGCGGAACGTCGACGAATGCGAGCGCGATCGCGAGGCAAATTCTCGAGAAAATTCCGGGGGACAACGATAGCAATGTTTCCTACTCTCAAGATCGCTATATTTTTCATGTGAAGCGCACCGATGGCCTCACCGTTCTCTGCATGGCCGACGACACCGCCGGAAGGAGAATTCCTTTTGCATTTCTTGAAGACATTCATCAGAGATTTGTGAGAACTTATGGTCGTGCAGTTCATTCAGCTCAGGCTTATGCAATGAATGATGATTTTTCAAGGGTTCTGAGCCAGCAAATGGAATATTACTCAAATGATCCAAATGCAGATAGGATAAACCGGTTAAAAGGTGAAATGGGTCAGGTACGCAATGTCATGATAGAGAATATTGATAAAGTTTTAGACAGAGGTGATCGCTTGGAGTTGCTGGTTGATAAAACTGCTAATATGCAAGGAAATACATTTCGATTCAGAAAACAAGCCCGTCGTTTTAGAAGCACTGTGTGGTGGAGAAATGTCAAACTCACGGTTGCACTGATAATAATCCTCCTCGTTATTGTATATGTCATACTGGCTTTTGCTTGCCATGGGCTTGCACTTCCTTCTTGCGTTAAGTGA 663 0.4465 MTILYALVARGSLVLAEFSGTSTNASAIARQILEKIPGDNDSNVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVRTYGRAVHSAQAYAMNDDFSRVLSQQMEYYSNDPNADRINRLKGEMGQVRNVMIENIDKVLDRGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVALIIILLVIVYVILAFACHGLALPSCVK* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0556 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Vvi4g0556 220 SUPERFAMILY SNARE fusion complex 120 187 - -
Vvi4g0556 220 Pfam Synaptobrevin 124 211 IPR042855 -
Vvi4g0556 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Vvi4g0556 220 FunFam Vesicle-associated membrane protein 7 124 209 - -
Vvi4g0556 220 CDD R-SNARE 125 184 - -
Vvi4g0556 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016020|GO:0016192
Vvi4g0556 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Vvi4g0556 220 PANTHER SNARE PROTEINS 1 210 - -
Vvi4g0556 220 CDD Longin 4 118 IPR010908 -
Vvi4g0556 220 Gene3D Longin domain 1 124 - -
Vvi4g0556 220 Gene3D - 125 209 - -
Vvi4g0556 220 FunFam Vesicle-associated membrane protein 711 1 124 - -
Vvi4g0556 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016020|GO:0016192
Vvi4g0556 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016020|GO:0016192
Vvi4g0556 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016020|GO:0016192
Vvi4g0556 220 SMART Longin_2 28 110 IPR010908 -
Vvi4g0556 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0556 Vvi-Chr4 5150655 5155366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0556 1 218 Miscellaneous Gene Families AT5G11150 79.452 6.03e-139 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0556 K08515 - vvi:100257603 426.402