Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0555 ATGGCTTCCAACAACCTCTCTGCAGCTATTTTGGTACTCTCCCTCCTCCTCTTCTCGACATTCTCCAGTGCTTGTGGCCCATGCCAGCCCAAACCAACACCTCCCGCCAAGGCTCCTCCAGCGAACCCCTTTTGCCCCAGGGACACACTCAAGTTCGGGGTATGCGCCGACCTTCTCGGAGGGCTGGTGAGCCTTGTTGCCGGAAGCCCACCTTCCAGCAAGTGCTGCGCTGTGCTTGAAGGCTTGGCGGACTTGGAAGCTGCAGCGTGCCTTTGCACTGCCATTAAGGCCAGTGTGCTTGGCATCAACGTGAAAGTGCCGGTTGCCATTAGTTTGCTTATTAGTGCGTGTGGGAAGTCCATTCCTCCGGGCTTCAAATGTGAATAG 387 0.5633 MASNNLSAAILVLSLLLFSTFSSACGPCQPKPTPPAKAPPANPFCPRDTLKFGVCADLLGGLVSLVAGSPPSSKCCAVLEGLADLEAAACLCTAIKASVLGINVKVPVAISLLISACGKSIPPGFKCE* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0555 128 SMART aai_6 45 127 IPR016140 -
Vvi4g0555 128 PANTHER - 7 127 - -
Vvi4g0555 128 CDD HPS_like 44 127 IPR027923 -
Vvi4g0555 128 Gene3D - 41 128 IPR036312 -
Vvi4g0555 128 Pfam Hydrophobic seed protein 45 127 IPR027923 -
Vvi4g0555 128 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 47 127 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0555 Vvi-Chr4 5125540 5125926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0555 40 127 Acyl Lipid Metabolism Gene Families AT4G22490 39.130 1.04e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0555 - - vvi:100262729 204.912