Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0554 ATGCCAAGGTTTTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGGATTACAACTATGCGGGGGGTATTAAGAAGATTCAATGACTTCTTGAAGTTATTTACTGATCTTAAAAAGGCATTTCCCAAGAAAAATATTCCACCAGCTCCTCCAAAGGGCCTCTTGCGGATGAAAAACAGGGTCTTATTGGAACAGAGAAGGCGCTCTTTGGAGGAGTGGATGGCAAAGCTACTATCTGACATTGATTTATCGAGAAGCATTTCAGTAGCATCCTTTCTTGAACTAGAGGCTGCTGCTAGGGCTTCATTCCAAGATGTAAATCAGCAAATTTCAGAAGCAAATCCTTCTGGCAATGGCACAATTTCATCACTTCAGCATCATCCCAATTCATCCCTATCTGTGGTTGCCGGTAGTTCATCAATCACATCAGATTATGGTAGTGATACTGCTTATGAGACATCTGAGCTGGGAACACCAAGGCTAGGAAAAGATAATAGTTCTGAACTTGATCTTGATGATCTAATATTGGATGAAGATTTGACAAGTCCAATAGAAAAGCTTGTGAAGTATGGGATGTCCAATATTGATGAGGGACTGTTTGTGGGACAGACTATTCTAGAGCAGCTGGAAGGTTTTCCTAGGCATAAAACTCATGGCAGACAGGTTAACAGTCTTATAGGGAAGGATACAGAGAATGGAAATGCTTCTAAAGCTGAATTTCTTGCTGGGGACAGAATGGATTTCTTGCCTGAGGCAGATGATGGTAAGGTAATTAGTCATGGTCGAAAGCTCTCAGCCGGGAGTGTTGGAAGTGACACAAGTTCTTTAAGGGGAAGTGAAATGTCAAATTCTGGAATTATAAATTCAATAGGTGATGGCTCCCTTGACCTTCCGGGAGGTGTTGAAGTTTCAAGAACCACGGAAATTCTCAACAACATAGAACTGCATTTCTCGGGTGATACACAAATAGTTCTTCCTTTAGATCAACGTCATAAAATGAACAGGATTCTTATGACCATGCAGCAAAGGCTGGTCACAGCGAAAACAGACATGGAGGATCTTATAGCAAGATTGCACCAAGAGGTAGCTGTGAAAGGTTACCTTACAACAAAGGTCAAAGATTTGGAAGTGGAACTTGAAACTACGAAACAAAAAAGTAAAGAAAACCTGCAGCAATCTATTTTAATTGAAAGAGAAAGAGTCACTCAAATGCAGTGGGATATGGAGGAACTCCGGAGAAAGACCTTTGAAATGGAGTTGAAGTTGAAGTCGAAGTGTGAACAGGATGACAAGTTGTATCCAGAGTCAACAAAAGTATCTTCCGATCAGGAGAAAGACATGCTGCTGGAGGAGTTGGATGCTACTAAAAAGCAGCTTGAAAACTTGCTGAAGCAACATGAAAAACTGGAAATGAAATCAAAATCAGATATTAAGGTTCTTGTTAAAGAGGTTAAATCTCTCAGAAGTTCTCAAACACAAATGAAGCAGGAGCTGAGTCGATCTCTAAAGGAAAAATCAGAAACAGAGAAACTCCTTCAACAGGAAAGAGAAAGAAGTGAGCTGGAAAACACTGCTAGGAGAAAATTGTTGTATGAATGTGAAATTCTTCACAATCAACTTCGAGAATGCAGCCTTAATTTCCCCTCAGAAGATGGAGATAATGTTGCTATGAATTCTTCCCCATTATCAGATGCCTTAGATCTCTTGACAACATCTGACAACCGAATTGGCCGCCTCCTTGCAGAGGCACCACTCTTAGCTCAAGACAATGAGTATGTTGTCTCTGGCATCAATAAAAATGACAACAGCAACAATGATGTATCAAGGATTGATGATGAGTTGAGGAAGGTGCTGAAGGATATCTTCTTGGAAAATGCTAGATTGAGAAAACAGGTCAATTCGGTTATCCGGAGGTCTCTCAAAATGGACATTACGTCTGAAAACAACCATGAGGATTCATAA 1962 0.4057 MPRFYRVQVGVQSPEGITTMRGVLRRFNDFLKLFTDLKKAFPKKNIPPAPPKGLLRMKNRVLLEQRRRSLEEWMAKLLSDIDLSRSISVASFLELEAAARASFQDVNQQISEANPSGNGTISSLQHHPNSSLSVVAGSSSITSDYGSDTAYETSELGTPRLGKDNSSELDLDDLILDEDLTSPIEKLVKYGMSNIDEGLFVGQTILEQLEGFPRHKTHGRQVNSLIGKDTENGNASKAEFLAGDRMDFLPEADDGKVISHGRKLSAGSVGSDTSSLRGSEMSNSGIINSIGDGSLDLPGGVEVSRTTEILNNIELHFSGDTQIVLPLDQRHKMNRILMTMQQRLVTAKTDMEDLIARLHQEVAVKGYLTTKVKDLEVELETTKQKSKENLQQSILIERERVTQMQWDMEELRRKTFEMELKLKSKCEQDDKLYPESTKVSSDQEKDMLLEELDATKKQLENLLKQHEKLEMKSKSDIKVLVKEVKSLRSSQTQMKQELSRSLKEKSETEKLLQQERERSELENTARRKLLYECEILHNQLRECSLNFPSEDGDNVAMNSSPLSDALDLLTTSDNRIGRLLAEAPLLAQDNEYVVSGINKNDNSNNDVSRIDDELRKVLKDIFLENARLRKQVNSVIRRSLKMDITSENNHEDS* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0554 653 Coils Coil 445 476 - -
Vvi4g0554 653 MobiDBLite consensus disorder prediction 498 518 - -
Vvi4g0554 653 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 4 651 IPR044588 GO:0015031
Vvi4g0554 653 FunFam Phox (PX) domain-containing protein 2 118 - -
Vvi4g0554 653 SMART PX_2 1 96 IPR001683 GO:0035091
Vvi4g0554 653 SUPERFAMILY PX domain 4 96 IPR036871 GO:0035091
Vvi4g0554 653 MobiDBLite consensus disorder prediction 490 518 - -
Vvi4g0554 653 ProSiteProfiles PX domain profile. 1 100 IPR001683 GO:0035091
Vvi4g0554 653 MobiDBLite consensus disorder prediction 110 138 - -
Vvi4g0554 653 Gene3D - 4 105 IPR036871 GO:0035091
Vvi4g0554 653 Pfam PX domain 21 94 IPR001683 GO:0035091
Vvi4g0554 653 Coils Coil 495 524 - -
Vvi4g0554 653 Coils Coil 337 357 - -
Vvi4g0554 653 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0554 Vvi-Chr4 5107428 5115126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0554 - - vvi:100267879 1213.36