Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0552 ATGGCCTTCGCAGCCGTTTTCCACGTTCCACCCACCTCTTCTCACCATTACTCCCAGTTGTGTTCCCTTGGGCTCAACAGGAAGCAGAAGAGATTAGCTGTTATGACAACTTCAAAAAGAAAGGGTCATTCCAGGCGGATTGTCAAATCAGTCTTGAACAACAGGAAGTCAAGCATAAATGACAATGGGTCAACTGAACCAGCTAGGGTTCTTCTGGAGAGGTTGTTTGCACAGACGCAGAAACTAGAAGAACATATGAGTAGGGATCCTGGTCTTCCACTGGACATACAATTGGGGCTTAACCTTGAAACCTTAGAATCTGATCTTCAGGCTGCATTGGTAGCCTTAAAGAAAAAGGAAGAAGATCTCCAAGATGCAGCGGGGATGGTTTTGATGGAACATACTGAATTAAACCGTGCAAAGGAGGAGTTGAAGCGGCATGCAGAAGAAATTGCTGTTGCTTGCTCTAAGCACGAGAAACTAGAAGAGGAGCTGAAGCAGGCAAATCTTAACCTAGCTTCTCGAGCAAGGCAGATAGAAGATCTAAAACTTCAGCTTAAAGACAGAGACCAAGAAATTTTTGCTGCACGATCTGCTCTGTCTTCGAAACAAGATGAAATGGATAAAATGAGAAATGAGTTGATGAAGAAGACTGAGGAAGCTGCTAAGAAGGAATCTGAACTCCAATCAATGGCTAAGCTCCTGGATGAAGCCAATGAAGTTGTCAAGAAACAAGAAATAGAACTGCAAGAACTTCAAAAATCAATCCAAGAGAAAGAGGAAGAACTAGAAGAATCTATGATGCTTCGGAAACTTGAAGAGAAGAAGCTCAAAGTGGCAGAGGCCAATTTGGAGAAGAAGACAATGGATTGGTTATTAGCAAAGGAAGAACTGAAGAAATTGGCAGAGGATGCAGCTAAACACATGGGAGAGAGTAATAAAACTATGAAGGAATTCAGAAGAGCGAAGAGGCTTCTTCATGATGTGAGATCTGAATTGGTTTCTTCCCAGAAATCTCTCGCTTCATCAAGACAAAAAATGCAAGAGCAGGAGAAGCTGTTAGAGAAACAACTCGCAGAACTTGAAGAACAAAAAACTAGCATTAATCATTACATGACGAGTTTGAAAGATGCCCAAATTGAAGTAGAGAGTGAAAGAGTGAAACTGAGGGTTGCAGAATCTCGAAACAAGGAGCTTGAGTGGGACTTATCTGTGAAGAAGGAGCTCATGGAAGAGTTACAAGAAGAGCTGAGGAAAGAAAAATCTTCTCTGCAACAGGTAATCCAAGAGACGTCTTTTCTCCAAAAGGAGCTTGATCAGAAAACTACTGAATTTGGAGAACTGCATAACCTGCTTCAGGTTAAAGAGTCGGAACTAGTGGAAGCTAGACTAGAAATCCAGCATTTGAAATCTGAGCAGGTGTCCCTTCAGCTTATCTTGAAGGAGAGAGATTTGGAACTCTTCAATGCACAGAAAAAGTTGGAGGAAGTAAACCAGGAAGTTTCGGAGCTAAAGATGCTCATGAATAATAGAGAAGACCAGCTTATGCAGGCCACTACTTTGCTGAAGGAGAAAGAGGAACATCTGCTGATAATGCAACATGAGCTCAATGATACGAAGCTGAAATTTTCTGAAGCAGAGAGTGTGGTAGAACGGATTGTAGACCTCACAAACAAACTGGTTATCTGCACAAAGGATGAAGAATGTACTGCAACTAGCCCATTTGATGATATGGGCCAGAATTTACTACACCAACTGTTTGAGAAACCAACCGATGATTTTAAGAGGCAGGAGAAAAGGTTAGAAACTGAACTCGAGTTGACCAGAGAAAGCCTCAGAACGAAAGAACTGGAAGTTCTAGCTGCACAGAGGGCTCTCACAATTAAAGACGAGGAACTCAAAATAGCTCTTGAGAGATTAGATGCAAGGGAGAAGGAACTTAGAAGGATGAAGGAAGAAACGATGGAGGATGCTAATCATCTGAAGAATCTTTATGCTTTGGCACAAGAAAGAATTGGTGAGAAAAGTGTTGGTGATTTGGCCATTGAGAAACTCCAACTGGAGGCAGCTCAACTGGAAGTTGAAGCTGCAACTAGCGCACTACATAAACTTGCAGAAATGAGTTGTGAGCTTCTGCATAATGTTAGCTTGAGCGTTGACTCTGAGACTGATACTGCTATATTCCTGCCAAATGGTTTTGATCCCTGGTTAAGTATGCATGAGAATAATGAGCATTTTACCAAGGTTAAAACTGAAGTTGCTCGGCTTTCAGCTATCACTGACCAGCTTGTGCAAGAGGCCGGTGTTGTTGGTGCTGCAAACTAG 2325 0.4219 MAFAAVFHVPPTSSHHYSQLCSLGLNRKQKRLAVMTTSKRKGHSRRIVKSVLNNRKSSINDNGSTEPARVLLERLFAQTQKLEEHMSRDPGLPLDIQLGLNLETLESDLQAALVALKKKEEDLQDAAGMVLMEHTELNRAKEELKRHAEEIAVACSKHEKLEEELKQANLNLASRARQIEDLKLQLKDRDQEIFAARSALSSKQDEMDKMRNELMKKTEEAAKKESELQSMAKLLDEANEVVKKQEIELQELQKSIQEKEEELEESMMLRKLEEKKLKVAEANLEKKTMDWLLAKEELKKLAEDAAKHMGESNKTMKEFRRAKRLLHDVRSELVSSQKSLASSRQKMQEQEKLLEKQLAELEEQKTSINHYMTSLKDAQIEVESERVKLRVAESRNKELEWDLSVKKELMEELQEELRKEKSSLQQVIQETSFLQKELDQKTTEFGELHNLLQVKESELVEARLEIQHLKSEQVSLQLILKERDLELFNAQKKLEEVNQEVSELKMLMNNREDQLMQATTLLKEKEEHLLIMQHELNDTKLKFSEAESVVERIVDLTNKLVICTKDEECTATSPFDDMGQNLLHQLFEKPTDDFKRQEKRLETELELTRESLRTKELEVLAAQRALTIKDEELKIALERLDAREKELRRMKEETMEDANHLKNLYALAQERIGEKSVGDLAIEKLQLEAAQLEVEAATSALHKLAEMSCELLHNVSLSVDSETDTAIFLPNGFDPWLSMHENNEHFTKVKTEVARLSAITDQLVQEAGVVGAAN* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0552 774 Coils Coil 340 367 - -
Vvi4g0552 774 Coils Coil 480 528 - -
Vvi4g0552 774 Coils Coil 375 444 - -
Vvi4g0552 774 Coils Coil 630 671 - -
Vvi4g0552 774 Coils Coil 200 290 - -
Vvi4g0552 774 Coils Coil 598 618 - -
Vvi4g0552 774 Coils Coil 452 472 - -
Vvi4g0552 774 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 49 738 - -
Vvi4g0552 774 Coils Coil 102 126 - -
Vvi4g0552 774 Coils Coil 137 185 - -
Vvi4g0552 774 Coils Coil 680 707 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0552 - - vvi:100262916 1308.12