Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0549 ATGCCTACCATTGATCTGGACGATATTGTGCCCAAGGTTTCACGATCTGCTGCTCTGCGTTTCTCGCCATTGCTCGTTATCAATGGCCTTTCTCGGAAGGCTTCTTTCTATTGGAAGCTTCCTCAACAGCCCATCAAGCTCTCTGTTCTCAAATTGGATGGCTCTTGTTTCCAAATTGAAGTAACAAAGACATCAACTGTTGCAGAGCTCAAGCAGGCAGTGGAGGATGCCTTTAGTCATTTGCCGAAGAAGGGACCTGGAAAGATTTCATGGCTGCATGTTTGGGGCCATTTCTGCTTATGTTATAATGATCAGAAGCTAGTAACTGAAACCGAGTATATCAAAAACTATGGGATCAAAGACGGTGATCAGGTGCAGCTTCATTTTGTCCGGCATCAATCAATCAACTATAACTTGAGAAAAAGGCGACAAAAAAGGCGGTGTGGTGCTTTGACACAACCCAGAATATCAGATGGCTGTGAAGAGAAAGAATCCAATGGCGAAGAAGATGATAATCAAGAGAATCAGAAGAAGGAAATTTTCAGAAAACGGGAGAAGTTCAAATTGTCAATGTTATTGGGTGGTTGGTTCTCATACTCCAAACTCACAAGCCCAGGAAGAAGGAAATATGAAGGCAAGACGAGTAAATCAAAATTTAGCAGTGGCTTGTTGGGCAGTTTTAGAAAGATGGTACGGATTTACAATAAGAAATCCGCCTTCTCAAAGAATGGCATGGAGAGAGGATTAATGGGGTCCAAGTAA 762 0.4252 MPTIDLDDIVPKVSRSAALRFSPLLVINGLSRKASFYWKLPQQPIKLSVLKLDGSCFQIEVTKTSTVAELKQAVEDAFSHLPKKGPGKISWLHVWGHFCLCYNDQKLVTETEYIKNYGIKDGDQVQLHFVRHQSINYNLRKRRQKRRCGALTQPRISDGCEEKESNGEEDDNQENQKKEIFRKREKFKLSMLLGGWFSYSKLTSPGRRKYEGKTSKSKFSSGLLGSFRKMVRIYNKKSAFSKNGMERGLMGSK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0549 253 SUPERFAMILY Ubiquitin-like 41 128 IPR029071 -
Vvi4g0549 253 CDD Ubl_SNRNP25 45 132 IPR040610 -
Vvi4g0549 253 Gene3D - 41 139 - -
Vvi4g0549 253 MobiDBLite consensus disorder prediction 159 178 - -
Vvi4g0549 253 Pfam Ubiquitin-like domain 45 132 IPR040610 -
Vvi4g0549 253 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 16 236 IPR039690 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0549 Vvi-Chr4 5060952 5065772 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0549 - K13153 vvi:100250997 495.352