Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0546 ATGGGGGTCTTAACCGTGTCTTTCTTTGTTCTTTGTATTATTGAGCTTGTTGCTGCACAGACGACCACTGACCGTGATGAAGTGGCGGCTCTCAACAAGCTGATAGATTACTGGAATTTGAGGAGCTTGAATTCCAGTATTGATCCCTGCACCCAGAATGCAACATGGGCTAGTAAAGATGCAAATCCCCGAGTCGCCTGTGACTGCACAAGCAACACCTGCCACATTACCCACCTGAAGATATATGCTCTGGACATTTCTGGTGAAATTCCTCCAGAATTATTCGTGCTAAAGAAACTGGTGGACTTGAATCTTGGTCAGAATGTATTAAGTGGCCCCATCCCAGCTGAAATTGGACAGTTATCAAATTTGCAATATCTTAGTCTTGGCATAAACAACCTGACAGGGAGGGTTCCTTCTGAGCTGGGAAATCTCACCAAGTTGGTTTCATTAAGTTTTGGCTCGAATAATTTTTTTGGACCATTACCTAAGGAGCTTGGAAATTTGACATCCTTACAGCAGCTGTACATTGATAGCAGTGGAGTGAGTGGACCAATTCCACAAGAGTTTGCAGGCTTGAAATCTCTTCAGATTCTCTGGGCATCTGATAATCTCTTCACTGGAAAGCTACCAGAATTCATCGGAACTTTAATAGAACTCAGAGACCTGCGAGTTGAGGGGACATTGCTTGAAGGCCCTATACCAAGCAGTTTTGGAGCTCTAACCAAACTGGAGGACCTGAGAATTGGTGATCTGAGAGGGCAAGATTCTTCTCTTGATTTCTTGGGAAGCCAAACAAGCTTGTCCATACTATCTTTGAGGAACTGTCGGGTGTCTGGCCGAATTCCAGACCAGCTTAGCACCTTCACTAAGTTGAAATATCTGGACTTGAGCTTCAACAAATTGACAGGAGAAATACTAAAATCATTCCAAGATTTTGTCTCATTAGAATATTTGTATCTTGGGAACAATAACTTGAATGGAGAGCTGCCTGCAAATATCATTAGTCAAGAGCTCATAGCACTGGATGTCTCCTTCAATCCTCTTTCTGGGAATTTACCACTAAATATCGCCAAAGTAGGATTATCGATGAATGTTCTTGGAACTTCCATCAATGCAAACAGTTTACAAGACAGGAAGGCTTCAGGGATGTTGCATTGCCTCCAAGGAAATATGAAGTGTACAAACAAAATTCCATCCTCTTCATTTTCTATCAAATGTGGAGGCACTGAACAAAGGTCTGCATCTGGGGTCAAATTTGATGATGACTCTGAAATACTAGGAGCTGCCTCATTGTACACAAGCCCTGATTATCAATGGGCAGTAAGCAACACTGGAAGCTTCATTTCCAACCCAAATGGACCTCAATATATAGCAAAGACAGATTCTCAAATCAGGGGAACTCTTGAGTCTGAACTGTATAAGACAGCAAGGGTTTCACCAAGCTCATTGAGGTACTATGGCCTGGGTTTGAAGAATGGGAAATATAGGGTTGAGCTCCACTTTGCAGAGATAGCCATGGAGGACTCTGTGTCATGGAAAGGCCTTGGAAGGCGTTTGTTTGATGTTTACATTCAGGGCGAGAGAGTTCTTGAAGGGTTCAACATTCAAAGAGAAGCAGGTGGGTCAAAGAGAGCCTTGGTGAAGACACTGGAGGCAAATGTCACAAACACAATCATGGAGATTCATTTCTTATGGGCTGGAAGAGGCACTTGCTGCATTCCATTTCAAAGCACATATGGACCATTAGTATCAGCCATCCATGCATATCAAGTGTCGGATGAAACTAGCTCTTCCTCCGAAAGCAACAAGAAGCGGATAGGAAAAGTAGTTGGAATAGTGGTTGGATGTGCAGGAGGGGTGGTGATAATCTCATCCATCTTCTACTTATGGTGGAAAAAGGAGGCATCTGGGCATACCCGAGTTCAAACAGAATCACCCAGGAAATGA 1950 0.4328 MGVLTVSFFVLCIIELVAAQTTTDRDEVAALNKLIDYWNLRSLNSSIDPCTQNATWASKDANPRVACDCTSNTCHITHLKIYALDISGEIPPELFVLKKLVDLNLGQNVLSGPIPAEIGQLSNLQYLSLGINNLTGRVPSELGNLTKLVSLSFGSNNFFGPLPKELGNLTSLQQLYIDSSGVSGPIPQEFAGLKSLQILWASDNLFTGKLPEFIGTLIELRDLRVEGTLLEGPIPSSFGALTKLEDLRIGDLRGQDSSLDFLGSQTSLSILSLRNCRVSGRIPDQLSTFTKLKYLDLSFNKLTGEILKSFQDFVSLEYLYLGNNNLNGELPANIISQELIALDVSFNPLSGNLPLNIAKVGLSMNVLGTSINANSLQDRKASGMLHCLQGNMKCTNKIPSSSFSIKCGGTEQRSASGVKFDDDSEILGAASLYTSPDYQWAVSNTGSFISNPNGPQYIAKTDSQIRGTLESELYKTARVSPSSLRYYGLGLKNGKYRVELHFAEIAMEDSVSWKGLGRRLFDVYIQGERVLEGFNIQREAGGSKRALVKTLEANVTNTIMEIHFLWAGRGTCCIPFQSTYGPLVSAIHAYQVSDETSSSSESNKKRIGKVVGIVVGCAGGVVIISSIFYLWWKKEASGHTRVQTESPRK* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0546 649 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 630 - -
Vvi4g0546 649 Gene3D Ribonuclease Inhibitor 25 254 IPR032675 -
Vvi4g0546 649 Gene3D - 400 593 - -
Vvi4g0546 649 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 260 375 - -
Vvi4g0546 649 SUPERFAMILY L domain-like 66 351 - -
Vvi4g0546 649 Pfam Malectin domain 403 587 IPR021720 -
Vvi4g0546 649 FunFam Os05g0256100 protein 29 254 - -
Vvi4g0546 649 Gene3D Ribonuclease Inhibitor 255 374 IPR032675 -
Vvi4g0546 649 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Vvi4g0546 649 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0546 Vvi-Chr4 5018072 5022681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0546 124 624 Receptor kinase-like Gene Family AT1G56120 46.275 2.80e-140 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0546 - - vvi:100249164 1227.23