Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0545 ATGGCGCCGAGTAGTATAAGGAAAGCGATTGGGAGCGTCAAGGACCAGACGAGCATTGGAATTGCGAAGATTGCGAGCAATATGGCGCCGGATCTAGAAGTGGCGATTGTGAAGGCAACGAGTCATGACGACGATCCGGCGGCGGAGAAGTATGTGCAAGAAATCTTGAACCTCACGAAGTACTCGCATGGTTACGTGAATGCTTGTGTGGCGGCAGTGTCGAAGAGATTGGGAAAAACTAGGGATTGGGTTGTGGCGCTGAAGGCGCTTGTGCTTGTGCATAGGCTGTTGGCGGAGGGTGACCCGGGGTTTCAGAGGGAGATTTTGTATGCGACACGGAGGGGAACGAGGTTGTTGAATATGTCGGATTTCAGGGACGAGGCCCATTCGAATTCGTGGGATCATTCTGCGTTTGTGAGGACTTTTGCTATGTATCTTGACCAAAGACTTGAATTTATCTTATATGAGAAGAAGAGCAGTAGCGGTGGCAGTGATGGAGGGGATGAGAGGTTTGGGACGAGGGAGGAACGTTGGAAGTCGCCTCCGAGTCGGGTTAATGATTATGAGTATGGAGGATATAGAGATGAGCCCAGTTCTGGAAATTATGGGATGAGGCGGTCCAGGTCATATGGGGATGTGGGGGAGTCGAGCGGGAGAGGGGGGCGTGACGGGCAGGAGGGGAAGAGAGCTGTAACCCCATTGAGGGAGATGAAGCCTGAGAGGATTTTCGGGAAGATGGGTCATTTGCAGAGGCTTTTGGATAGGTTCTTGGCGTGTCGGCCAACAGGGTTGGCCAAGAATAATAGGATGGTTTTGATTGCTTTGTATCCTGTTGTTAGGGAGAGTTTTCAGTTGTATGCGGATATCTGTGAGGTTTTAGCAGTTTTGCTGGATCGCTTTTTTGAAATGGAGTACCCAGATTGTGTTAAGGCCTTTGATGCATATGCCAGTACGGCAAAGCAGATTGATGAGCTTGTGGCATTCTATAATTGGTGTAAGGATACAGGTGTGGCGAGGTCATCTGAATACCCGGAAGTGCAGAGGATCACTGATAAGTTGTTGGAGACCTTGGAGGAGTTTGTGAGGGACAGAGCTAAGGGACCAAAGAGTCCAGAGAGGAACGAGGAACCACAGCCCGTGGCTCGAGAGGAGGAGCCAGTGCCAGATATGAATGAAATAAAGGCGCTTCCTCCACCAGAGAATTACACTCCTCCACCTCCACCCCCACCTGAGCCAGAACCTAAACCACAGCAACCGCAAGTGACAGAAGACTTGGTGAATTTGAGGGATGAAGGGGTGACTGCAGATGATCAAGGAAATAGGTTTGCTCTGGCGCTGTTTGCTGGTCCAGGGGCAAACAACACAAATGGGTCATGGGAAGCATTCCCGTCAAATGGGCAACCCGAGGTGACCTCTGCTTGGCAGACACCAGCTGCTGAAACTGGTAAGGCAGATTGGGAACTGGCCCTGGTCGAGACAGCAAGCAATCTATCAAGGCAGAAAGCAACCTTGGCTGGTGGATTTGATCCATTGCTCTTGAATGGCATGTATGATCAAGGAATGGTAAGGCAGCATGTGAGCACTGCTCAAATGACTGGAGGCAGCGCCAGCAGCGTGGCATTGCCTGGCCTGGGAAAGAGCACGACCCCTGTATTGGCTCTCCCAGCCCCAGATGGAACCGTTCAAACAGTCGGACAAGATCCATTTGCTGCATCCTTGAGCATTCCCCCTCCGTCGTATGTGCAGATGGCTGATATGGAGAAGAAACAACAGTTTCTTACGCAGGAACAGCAGCTATGGCAGCAGTATGGAAGAGATGGGATGCAAGGCCAAGCCAGTTTGGCCAAGTTGGCTGGTGCTGGTTACTATGCTCAGGGTCCTATGCCAATGATGCCTTATGGGATGCCGCCCATCAATGGAATGGGACCACCAGGCGGGGTTGGCATCTATTGGGGATGGGTCAGCCTTTTTATTAACAGAGAGACCCCCTAG 1992 0.5141 MAPSSIRKAIGSVKDQTSIGIAKIASNMAPDLEVAIVKATSHDDDPAAEKYVQEILNLTKYSHGYVNACVAAVSKRLGKTRDWVVALKALVLVHRLLAEGDPGFQREILYATRRGTRLLNMSDFRDEAHSNSWDHSAFVRTFAMYLDQRLEFILYEKKSSSGGSDGGDERFGTREERWKSPPSRVNDYEYGGYRDEPSSGNYGMRRSRSYGDVGESSGRGGRDGQEGKRAVTPLREMKPERIFGKMGHLQRLLDRFLACRPTGLAKNNRMVLIALYPVVRESFQLYADICEVLAVLLDRFFEMEYPDCVKAFDAYASTAKQIDELVAFYNWCKDTGVARSSEYPEVQRITDKLLETLEEFVRDRAKGPKSPERNEEPQPVAREEEPVPDMNEIKALPPPENYTPPPPPPPEPEPKPQQPQVTEDLVNLRDEGVTADDQGNRFALALFAGPGANNTNGSWEAFPSNGQPEVTSAWQTPAAETGKADWELALVETASNLSRQKATLAGGFDPLLLNGMYDQGMVRQHVSTAQMTGGSASSVALPGLGKSTTPVLALPAPDGTVQTVGQDPFAASLSIPPPSYVQMADMEKKQQFLTQEQQLWQQYGRDGMQGQASLAKLAGAGYYAQGPMPMMPYGMPPINGMGPPGGVGIYWGWVSLFINRETP* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0545 663 FunFam putative clathrin assembly protein At2g25430 228 373 - -
Vvi4g0545 663 FunFam Clathrin coat assembly protein 3 156 - -
Vvi4g0545 663 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Vvi4g0545 663 MobiDBLite consensus disorder prediction 162 183 - -
Vvi4g0545 663 SMART enth_2 30 160 IPR013809 -
Vvi4g0545 663 MobiDBLite consensus disorder prediction 361 390 - -
Vvi4g0545 663 SUPERFAMILY ENTH/VHS domain 30 152 IPR008942 -
Vvi4g0545 663 Gene3D - 2 155 IPR008942 -
Vvi4g0545 663 SUPERFAMILY GAT-like domain 233 363 - -
Vvi4g0545 663 Gene3D ANTH domain 227 373 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vvi4g0545 663 MobiDBLite consensus disorder prediction 159 231 - -
Vvi4g0545 663 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 595 IPR045192 GO:0048268|GO:0072583
Vvi4g0545 663 Pfam ANTH domain 31 363 IPR011417 GO:0005543
Vvi4g0545 663 MobiDBLite consensus disorder prediction 361 421 - -
Vvi4g0545 663 CDD ANTH_N_AP180_plant 32 152 - -
Vvi4g0545 663 MobiDBLite consensus disorder prediction 398 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0545 Vvi-Chr4 5011754 5014271 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0545 - - vvi:100261235 1184.09