Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0539 ATGGATGTGGATGATCTTTTACCTGTTAATGGGCTTGAGGAGGGCCATCAAAATGGAATTCATGAGCAACTTTCTGCTGCTGGAGGGGAAGGTGTTATTCCAGAGAAAGTGAATGGGAATCTTGATCTTAGCACAGAGAGTGCAGGGATGAATGGAAATGCAGAAAATGTTGGCATGTGGGATGACAATGGAATCATTAACGCTTCTACTGCAGAAGTTGGAGAGGGATCACATATCCGTGCAAGAGTCAATGGATTGACCATTTCTGAGGATTTGGAAGTGGAAGATGCTGATCCATCAAAGCATTCCAAACCACAGAAAGGTCAAGGGAAGAGCAGTAAAGAGAAACTTTCGAGCCCCAAACATGCAGGGACTACTTGGGTGAAGAAGAAAGATGGGAAAGATGAAATTGTGACTTCTGCTAGTACCAATGGTTCTCTTGCCTCTATTTCACGCCCAAAACAAACTCTCAAAAGTAGATCGTTCAGTGATAAGCAGGACCATCTATCCAAGCAATCTAAAAACTCTGAGGCAGCATCTTCTACCTCAAATATGATACAGCCTGAAGGCCGTGCGGAAAAGACAAGACTGAAGCCTGTGAAACTGGGAGCCCCTACTGTGTCTGATGTGAACACAAAATCTCCGAGTCCCACAGAAGATACAAAACCTCGTAGAGTTGCTGCACTTCCATCCTACAATTTCAGCTTTAGGTGTGATGAACGAGCTGAGAAAAGAAGAGAGTTCTATACTAAACTTGAGGAAAAGACTCATGCAAAGGAAATAGAGCGGACTAACTTGCAAGCTAAGTCCAAGGAAACTCAAGAAGCTGAGATTAAGATGCTTAGGAAGAGTTTGACCTTTAAAGCAACGCCCATGCCAAGCTTCTATCAGGAACCCCCACCTCCTAAAGTGGAATTAAAGAAGATACCACCAACAAGAGCCAAATCTCCCAAGCTTGGTCGAAAGAAGAGTTCTCCTGCACCAGAATCTGAGGGAAGCAGTAGCCATCGATCAGGCCGGTTAAGTCTGGATGAGAAAGTGTCCCAGAACAACCCTGCCAAAGGAATTTCCCCTGGCCATCCTAAGAAACCGCTGCGGAAGTCCCTTCCCAAACTGCCTTCTGAAAGGACCAACTTATCCAAATCAACAAATGAAGCTGCATTTCTCAGCCAACAGCAGGAGCCGGTTCAAGTTCCTGATCCTAGCAAATCTCAGCCTGATGCAGATGACAAGTCAGAGGTTGAAGAGCAAGCTCAGCAGACCATGTTTCAGGAACCCAGTGCATTGGAGTGTTAG 1296 0.4537 MDVDDLLPVNGLEEGHQNGIHEQLSAAGGEGVIPEKVNGNLDLSTESAGMNGNAENVGMWDDNGIINASTAEVGEGSHIRARVNGLTISEDLEVEDADPSKHSKPQKGQGKSSKEKLSSPKHAGTTWVKKKDGKDEIVTSASTNGSLASISRPKQTLKSRSFSDKQDHLSKQSKNSEAASSTSNMIQPEGRAEKTRLKPVKLGAPTVSDVNTKSPSPTEDTKPRRVAALPSYNFSFRCDERAEKRREFYTKLEEKTHAKEIERTNLQAKSKETQEAEIKMLRKSLTFKATPMPSFYQEPPPPKVELKKIPPTRAKSPKLGRKKSSPAPESEGSSSHRSGRLSLDEKVSQNNPAKGISPGHPKKPLRKSLPKLPSERTNLSKSTNEAAFLSQQQEPVQVPDPSKSQPDADDKSEVEEQAQQTMFQEPSALEC* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0539 431 MobiDBLite consensus disorder prediction 94 118 - -
Vvi4g0539 431 MobiDBLite consensus disorder prediction 158 172 - -
Vvi4g0539 431 MobiDBLite consensus disorder prediction 138 157 - -
Vvi4g0539 431 MobiDBLite consensus disorder prediction 93 226 - -
Vvi4g0539 431 MobiDBLite consensus disorder prediction 417 431 - -
Vvi4g0539 431 MobiDBLite consensus disorder prediction 284 431 - -
Vvi4g0539 431 Coils Coil 249 269 - -
Vvi4g0539 431 PANTHER PROTEIN WVD2-LIKE 4 94 422 IPR044833 GO:0008017
Vvi4g0539 431 Pfam Targeting protein for Xklp2 (TPX2) domain 234 304 IPR027329 -
Vvi4g0539 431 MobiDBLite consensus disorder prediction 373 400 - -
Vvi4g0539 431 MobiDBLite consensus disorder prediction 173 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0539 Vvi-Chr4 4925266 4931292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0539 - - vvi:100244101 814.298