Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0538 ATGTCAAAGCTCTTCGATTATACCGGAAATGATGCCTTCTGCCCCGGGGGGTCAATATACTCAAACATCAAGGATTCCAGCCTCTTTTTGTCCCTTGGTCGCCATGTGGATGTGTATTTCCCTCCTCGCAAGAGATCTCGCATCAGTGCCCCATTTGTTGTCAGCGGAGACAAGTTTGAGCAGAAGGAGCAGGTCTCCATTGATGTTCTTCCTGATGAGTGTCTTTTTGAGATCCTCAGACGGTTGCCTGAAGGCCAAGAGAAGAGTGCCTGTGCTTGTGTCTCCAAGCGCTGGCTTATGCTTCTAAGCAGTATCCAGAGAGACGAGATCTGCAGTAACAAAACAACTGGGTTTTTGAAGCCTAAGGAAACTTTGATTTCAAGAAACACAGATGAGTCTTCTGAGGCTAAAAAGAAGGGTGGTGATGAAGTGACACCTGAGGCTGTAGATCTGGAAATTGAAAGTGATGGATACCTTTCCAGATGCTTGGAAGGGAAGAAAGCAACGGATGTCAGACTTGCTGCCATTGCTGTTGGAACTGGTGGCCACGGAGGGCTAGGCAAGCTTTTGATCCGTGGAAGCAATTCTAGTTGCAGGGTCACAAACCTTGGCCTTGGGGCAATTGCTCGTGGTTGTCCTTCTTTGAGGGTTCTGTCTCTATGGAATGTATCTTCAATTGCTGATGAAGGTCTGATTGAGATTGCTAATGGATGTCACCAATTAGAGAAGCTTGACCTTTGTGGGTGTCCCACAATTTCTGATAAGGCTTTGGTTGCAATTGCAAAGAACTGCCATAATTTGACTGCTTTAACAATAGAGTCCTGCCCAAGAATTGGGAATGCGGGTTTGCAAGCTGTTGGCCAGTTCTGCCCCAATTTGAAGTCCATTTCAATCAAGAACTGCCCTCTTGTTGGGGATCAAGGAGTTGCAAGCTTGTTATCATCAGCCTCGTATGCCCTGACAAAGGTTAAGCTCCATGCTTTGAACATCACTGATGTGTCTCTTGCTGTGATTGGACACTATGGCAAAGCCATTACTGATCTAGACCTTACTGGCCTCCAAAACGTGGGCGAGAGGGGCTTCTGGGTCATGGGTAGTGGTCATGGACTGCAGAAGCTGAAGTCCCTCACTGTTACATCCTGCCAAGGTGTGACAGATATGGGACTTGAAGCTGTGGGAAAGGGTTGCCCAAATTTGAAACAGTTTTGCCTCCGAAAATGTGCATTCTTATCTGACAATGGCCTAGTCTCTCTAGCCAAAGTTGCAGCTTCCCTTGAGAGTCTACAACTGGAGGAGTGCCACCACATTACCCAATATGGAGTTTTTGGTGCACTTGTAAGCTGTGGGGGGAAGTTGAAATCCCTTGCTCTGGTGAACTGCTTTGGGATTAAGGACACTGTTGAGGGATTGCCTCTAATGACTCCTTGCAAATCACTGAGCTCCTTGTCCATCCGTAACTGCCCTGGATTTGGTAATGCTAGCTTGTGTATGGTGGGGAAGCTGTGTCCTCAACTGCAGCGTTTGGACCTCAGTGGGGCTCTCAGAATAACAAATGCAGGGTTTCTGCCACTGCTTGAGAGCTGTGAGGCTAGTCTGATAAAGGTTAATCTTAGCGGTTGCATGAATTTGACGGACAATGTGGTCTCAGCCTTGGCTAAGGTGCATGGTGGGACTCTTGAACAGCTGAATCTTGATGGTTGCCAGAAGATCACTGATGCCAGCATGTTTGCAATTGCAGAAAACTGTGCATTGCTTTCAGATCTTGATGTTTCAAAGACTGCAATCACTGACTATGGCGTTGCAGCTCTGGCTTCTGCAAAACATCTCAATGTGCAGATCCTCTCTCTGTCTGGTTGCTCTTTGATATCAAACCAAAGTGTCCCATTCTTGCGAAAATTGGGTCAGACCCTGTTGGGGTTGAACCTTCAGCAGTGCAATACAATCAGCAGCAGCATGGTTAACATGCTTGTGGAGCAGCTATGGAGGTGCGACATCCTTTTCTAA 2004 0.4716 MSKLFDYTGNDAFCPGGSIYSNIKDSSLFLSLGRHVDVYFPPRKRSRISAPFVVSGDKFEQKEQVSIDVLPDECLFEILRRLPEGQEKSACACVSKRWLMLLSSIQRDEICSNKTTGFLKPKETLISRNTDESSEAKKKGGDEVTPEAVDLEIESDGYLSRCLEGKKATDVRLAAIAVGTGGHGGLGKLLIRGSNSSCRVTNLGLGAIARGCPSLRVLSLWNVSSIADEGLIEIANGCHQLEKLDLCGCPTISDKALVAIAKNCHNLTALTIESCPRIGNAGLQAVGQFCPNLKSISIKNCPLVGDQGVASLLSSASYALTKVKLHALNITDVSLAVIGHYGKAITDLDLTGLQNVGERGFWVMGSGHGLQKLKSLTVTSCQGVTDMGLEAVGKGCPNLKQFCLRKCAFLSDNGLVSLAKVAASLESLQLEECHHITQYGVFGALVSCGGKLKSLALVNCFGIKDTVEGLPLMTPCKSLSSLSIRNCPGFGNASLCMVGKLCPQLQRLDLSGALRITNAGFLPLLESCEASLIKVNLSGCMNLTDNVVSALAKVHGGTLEQLNLDGCQKITDASMFAIAENCALLSDLDVSKTAITDYGVAALASAKHLNVQILSLSGCSLISNQSVPFLRKLGQTLLGLNLQQCNTISSSMVNMLVEQLWRCDILF* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0538 667 SUPERFAMILY RNI-like 323 664 - -
Vvi4g0538 667 Gene3D Ribonuclease Inhibitor 188 262 IPR032675 -
Vvi4g0538 667 SUPERFAMILY F-box domain 59 104 IPR036047 GO:0005515
Vvi4g0538 667 CDD F-box_AtTIR1-like 67 104 - -
Vvi4g0538 667 SUPERFAMILY RNI-like 196 441 - -
Vvi4g0538 667 Gene3D Ribonuclease Inhibitor 470 666 IPR032675 -
Vvi4g0538 667 Pfam Leucine Rich repeat 558 579 IPR001611 GO:0005515
Vvi4g0538 667 Pfam Leucine Rich repeat 263 286 IPR001611 GO:0005515
Vvi4g0538 667 FunFam EIN3-binding F-box protein 1 66 103 - -
Vvi4g0538 667 FunFam EIN3-binding F-box protein 1 158 276 - -
Vvi4g0538 667 Pfam F-box domain 69 107 IPR001810 GO:0005515
Vvi4g0538 667 FunFam EIN3-binding F-box protein 1 277 467 - -
Vvi4g0538 667 FunFam EIN3-binding F-box protein 1 470 667 - -
Vvi4g0538 667 Gene3D Ribonuclease Inhibitor 263 469 IPR032675 -
Vvi4g0538 667 PANTHER UNCHARACTERIZED 472 650 - -
Vvi4g0538 667 SMART LRR_CC_2 342 367 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 556 581 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 212 237 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 238 263 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 396 421 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 608 633 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 422 448 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 582 606 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 529 554 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 370 395 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 264 289 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 290 315 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 502 527 IPR006553 -
Vvi4g0538 667 SMART LRR_CC_2 476 501 IPR006553 -
Vvi4g0538 667 Gene3D - 59 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0538 Vvi-Chr4 4918938 4922210 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0538 K14515 - vvi:100249270 1291.56