Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0534 ATGGAGTCAGAGGGAAGTGAAAAGGATATGGTGGTAACGCAAATTAGTATTGGTGGATTCGATCAATATGTCACTGCAACAGAGTTAACGTATTACTTGGAAGATACAATTGGAAGTGTTGATAGGTGCAGACTGAAAACTTCGTCAACTCCTCCTGAGTCCTATCCTGATTTTGAGATCATTGACACCGCAAAGATTGAAAGAACAGAAGATTACAAAAAAGTTGAGCCGCATGCATTTGTGCATTTTGTGTCCCCTGAAGCAGCAACTTGGGCTTTGGATGCTGCTGGCAAGAGTGAACTCTTTTTGCATGGCAAGCCCTTGAAAGTAAGCTTGGGGCCTGAGACTCCGTTCCACTTGAACCAGAGGAGGAGGACTACATTTCCTTTTAAGTTTCCTGATGTGCGTCTTGAGATTGGGATCTTGGTTAGCCGTGATGAGTACTTTGCTGGTTGGAGAGGACCCTCTTCTGGGGTTGATTTTCTTGTGGATCCCTTTGATGGGACATGTAAGTTTCTTTTCACAAAGGATACTGCTTTCTCTTTCAAAGGCATGCCCAAACATGCTGTGATAAAATGCAATTTTAAAGTGGAGTTCTTGGTGAGAGAAATCAATGAGGTCAGACAACGAAGAGATATGTCGTCTTTAATATTATTGTTGCAGCTATCTTCATCTCCTTTTGTCTATTACAGAACTGCCGATGATGATATTGAAGAAACAGTTCCCTTTGACCTATTGGATGATGATGATCCATGGATCCGAACCACTGATTTTACAGTTAGTGGAGCCATTGGGAGATGTAATTCCTATAGAATTTCAATCCCACCTCGTTATGGTGCAAAGTTGAAGAAGGCCATGGACTACCTCAGGGCACGTAGGGTCAATGTATTAGAAGACAGTCCCAAATGGCAGCTTAGGGTCCGGGATGAACCTGATTTTGGGTTGCCTATGTCAGACCCCTTTTTCTGTATTCAACACAAGGAAGGCATAGATTTTCGGGTAATGTTTCTAGTGAATGCTGTCATGCACAAAGGCATAATCAACCAGCATCAGTTGTCTGACAAATTCTTTGATTTATTGAGAAGCCAACAGAAGGATATCAATATAGCAGCATTAAAGCACATATGTTCCTACAGGCACCCAGTTTTCGATGCATATCAGAGGCTTAAGCTTGTCCATAAATGGTTGCTAAAGAACCCTAAGCTTCTCAAGAGCCCGAAAGAGTTGGATGATATTGTGGAAGTTAGGAGATTGGTCATTACCCCGTCCAAAGCGTATTGTCTTCCACCTGAAGTTGAACTCTCTAATAGGGTTCTTAGGAATTATAAAGAAGTTTCTGATCGATTTTTAAGGGTTACGTTCATGGATGAAGGCATGCAGACGATTAATGCTAATGTTCTCAACTATTATGTTGCCCCGATTGTGAAAGTGATCACATCAAATTCCTTTCCCCAGAAAACTAGAGTGTTCAAAAGGGTTAAAACTATTTTGACTGATGGCTTCTATTTATGTGGTCGGAAGTACTCATTCTTGGCATTCTCATCTAACCAGTTGAGGGATCGTTCTGCTTGGTTTTTTGCTGAAGACAAGAAAACAAGTGTCAGGGCCATAAAAAGTTGGATGGGAAAGTTCACAAACCGAAATGTTGCCAAGTGTGCTGCCAGGATGGGGCAGTGCTTTTCATCCACTTATGCCACGGTTGAAGTTCCATCATGGGAGGTGAAGGAACTTCCGGATATCAAGAGGAATGGCTATGATTTCTCTGATGGGATTGGCAAAATAGTCCCTGATCTTGCAATGGAAGTTGCAGAGAAATTGAAACTGGAAGGCACACCATCAGCATATCAGATAAGATACGCTGGCTGCAAAGGGGTAGTTGCGTGTTGGCCAAGTGACAATGATGGGATTCGTCTGTCTTGGAGGCCTAGTATGAACAAGTTCCTTTCAGACCATACCATCCTTGAAATTTGTTCATGGACAAGGTTTCAGCCAGGATTCTTAAACAGGCAGATAGTGACATTGCTTTCGGCCTTGAATGTTCCAGATAAAATATTCTGGAAAATGCAGGAATCAATGATTTCTAAACTAAATCAAATGCTCACAGACACAGATGTGGCTTTTGATGTTCTTATCGCATCATGTGCTGAGCAAGGAAATACTGCAGCAATAATGTTAAGCGCGGGTTTCAAGCCTCAGACAGAACCTCATCTACAGGGCATGCTAACTTGTATAAGAGCTGCACAGTTTTGGGGCCTCAGAGAAAAGGCTAGGATCTTTGTGCCATCTGGGAGGTGGCTGATGGGCTGCCTAGATGAATTAGGGGTGCTTGAACAAGGCCAGTGCTTTATCCAGGTTTCAAGCCCTTCCTTGGAGAATTGTTTCTTAAAGCATGGATCTCGGTTTTCTGCACAGAAAAACCTAAAAGTAATCAAGGGAATTGTTGCAATAGCTAAGAATCCTTGTCTTCACCCTGGAGACGTACGGATTCTTGAAGCAGTAGATGCGCCAGGTTTGGAACACCTGGTTGACTGTCTGGTTTTTCCTCAAAAGGGGGATAGGCCCCACTCCAATGAAGCATCAGGAAGTGACCTGGATGGGGATCTGTACTTCGTGACCTGGGAGGAAACCCTTATTCCTCCAAGTAAGCAAAGTTGGCCACCCATGCAGTATGATTCTGCAGAAGCCAAAGCACTGGCACGTGAAGTTACTTCTTTGGACATAATAGATTTCTTCACGAAGAACATGGTGAATGAGAACCTGGGTGCAATCTGCAATGCTCATGTGGTTCATGCTGACCGCAGTGAATATGGAGCACTGGATGAAGCCTGCCTTGATCTGGCAGAGCGTGCTGCAACTGCTGTTGATTTTCCTAAAACTGGCAAGCTTGTGACCTTGCCACCATATCTTAAACCAAAGATGTATCCAGATTTCATGGGAAAAGAAGAATTTCAGACATACAGGTCTAATAAAATCCTAGGCAAAATGTATCGCCAGATCAAAGATGCTTACAATGAAGATGTATCAGAATCTTCTGAGCAAATATTTGGTGCTGATAAGGTTCCTTTTGACGAGGATCTTGGCATTCCAGGATCTGCTGATTTCATCAATGATGCATGGATTCATAAATGCTCTTATGATGGTCAGCTAAATGGTCTTCTGGGACAGTATAAAGTGAAGAGGGAAGAAGAGGTTGTAACTGGGCATGTTTGGTCCATGCCAAAGTACAAAAGCAGAAAGCAAGGGGAACTGACGGAGAGGCTGAAGCATGCTTACTCCTCCCTGAAGAAAGAGTTCAGGCAAATTTTTGAGAAGATGAACTCAGATTTTGATCAACTTACTGATGACGAGAAGAACAGATTGTATGAGCAGAAGGCATCAGCATGGTATCAGGTCACTTATCATCCCACATGGGTGAAAAAGTCATTGGAGTTGCAAAATCCAGATGAGGTCTTCGGGGAGAGGGTGATGTTGAGTTTTGCCTGGATCACAGCTGATTACCTTGCTAGGATCAAAATCAGGCGAAAAGGAACTGGAAATGTTGATTCTTCTAAACCAATCAATTCTTTGGCAAGGTTTCTTGTTGATCGGATATGA 3594 0.4293 MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIKRNGYDFSDGIGKIVPDLAMEVAEKLKLEGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSAQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTWVKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0534 1197 PANTHER RNA-DEPENDENT RNA POLYMERASE 11 1190 IPR007855 GO:0003968
Vvi4g0534 1197 Gene3D - 1 118 IPR012677 -
Vvi4g0534 1197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 115 IPR000504 GO:0003723
Vvi4g0534 1197 CDD RRM_SF 15 111 - -
Vvi4g0534 1197 Pfam RNA dependent RNA polymerase 420 999 IPR007855 GO:0003968
Vvi4g0534 1197 SUPERFAMILY RNA-binding domain, RBD 8 122 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0534 Vvi-Chr4 4881156 4885746 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0534 K11699 - vvi:100262771 2421.74