Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0517 ATGCGATTCTCATACCTCAAACCAAGGCTTTTACATAGCATAAACACGTCAAAGCTCAAAACGACGACCCTTCACCATCAATCCAACATGAACCATAGAGCTGTTGAACAACCCTGCTTGGATATCCTCCAAGCCTGTAACACTCTTCCCAAACTCGCTCAACTCCATACCCACATTATCAAATTGGGTTTCCAGAATAACCCTTTAGTCCTCACCAAGTTCACTTCTGCTTCGTCCAATCTCGATGCCATCCCCTACGCGATGTCGCTTGTTTTCTCAGTGGAAGATGCCCGTGTCTATGACGCCTTCCTTTTCAGTACTATCATTAGAGCTTACGCTGAAAGTAGTCAATCCAAGCACAATGCTATATTTTATTATAACCTCATGCTTGGATATGGGATTTCGCCCAATAAATATGCGTTTCCCTTCGTTCTAAAGGCCTGCGCAGGTCTTAGGGACTTGAATTTGGGTAAGGCGGTTCATGGTTCATTGGTAAAATTTGGGTTTGATGATGATATTTTTGTGCAGAACACTATGGTTCACATGTATTGCTGCTGTTCCGGAGGGATGGAGTTTGCTAGGAAGTTGTTCGATGAAATGCCAAAGTTGGACCCGGTTACGTGGACTGCAATGATTGGCGGGTACGCACGTTTGGGCCAGTCTGCTGGTGCTGTTGGGCTGTTTAGGAAGATGCAGATTGCAGGTGTTTGCCCAGATGATGTTACCATGGTTTCCGTTCTGTCTGCTTGTACTGATTTAGGTGCCCTTGAGCTTGGAAAATGGATTGAGTCTTATATCGAGAAGGAAAGGGTTTTAAAAACTGTAGAGCTCTCTAATGCCCTCGTAGACATGTTTGCAAAGTGTGGGGATGTTGATAAAGCATTGGGGTTATTTAGAAACATGAGCAAGAGAACAATTGTTTCTTGGACTTCTGTCATCGTTGGCCTGGCTATGCATGGTCGAGGATTGGAGGCCGTTTCTTTATTTGAGGAGATGAAAGCATCTGGGATGGTCCCAGAAGATATTGCATTTATTGGGTTGCTCTCAGCTTGTAGTCACTCAGGTTTAGTTGAAAGGGGCAGGCAATACTTTAGTGAAATGACTAGGCAATTTGGCATTGTACCTAAGATAGAGCACTATGGATGCATGGTGGATTTGTTAAGCAGGGCTGGACTTGTCACTGAGGCACTAGAGTTTGTTGAAAGAATGCCCATTGAGCCAAACCCAATAATCTGGCGAACTCTGATTAGTGCTTGCCGCGTCCATGGTGAGCTCAAGCTTGGGGAAAGCATCAGTAAACAGTTAATCAGAAATGAACCCATGCATGAGTCAAACTATGTGTTACTTTCCAATATCTATGGAAAAATGTTAGATTGGGAGAAGAAATCCAAGATTAGAGTTGCTATGGGGAAGAAAGGGATCCAAAAGGTCCCAGGAAGCACCATGATTGAACTAGACAATGAAATTCATGAATTTATTGTAGGAGATAGATCACATAATCAATATAATGAAATTATTAAGATGGTGAATGAGATGGGGAGGGAAATGAAGAGGGCTGGATATGCTCCTACTACAACAGAGGTGTTTCTTGATATTGATGAAGAAGATAAAGAAGATGCTTTAAGTAGACATAGCGAAAAGCTGGCTATTGCTTTTGCACTTCTGAACACACCACCAGGATCTCCTATTCGGATTACAAAGAATTTGCGGGTTTGTGGTGATTGTCACTCTGCTTCTAAGTTCATCTCCAAGATTTATAATCGAGAAATTGTGATGAGAGACAGGAGCCGGTTTCACCATTTCAGAGATGGGCAATGTTCATGTGGAGATTTCTGGTGA 1839 0.429 MRFSYLKPRLLHSINTSKLKTTTLHHQSNMNHRAVEQPCLDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0517 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Vvi4g0517 612 FunFam Pentatricopeptide repeat-containing protein 277 503 - -
Vvi4g0517 612 NCBIfam pentatricopeptide repeat 307 339 IPR002885 -
Vvi4g0517 612 NCBIfam pentatricopeptide repeat 279 304 IPR002885 -
Vvi4g0517 612 NCBIfam pentatricopeptide repeat 206 239 IPR002885 -
Vvi4g0517 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Vvi4g0517 612 Pfam DYW family of nucleic acid deaminases 520 612 IPR032867 GO:0008270
Vvi4g0517 612 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Vvi4g0517 612 Pfam PPR repeat 279 304 IPR002885 -
Vvi4g0517 612 Pfam PPR repeat 307 336 IPR002885 -
Vvi4g0517 612 Pfam PPR repeat 379 403 IPR002885 -
Vvi4g0517 612 Pfam PPR repeat 184 202 IPR002885 -
Vvi4g0517 612 Pfam PPR repeat 347 369 IPR002885 -
Vvi4g0517 612 Pfam E motif 422 484 IPR046848 -
Vvi4g0517 612 Pfam PPR repeat family 204 250 IPR002885 -
Vvi4g0517 612 Gene3D Tetratricopeptide repeat domain 276 491 IPR011990 GO:0005515
Vvi4g0517 612 Gene3D Tetratricopeptide repeat domain 116 273 IPR011990 GO:0005515
Vvi4g0517 612 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 204 549 IPR046960 GO:0003723|GO:0009451
Vvi4g0517 612 FunFam Pentatricopeptide repeat-containing protein chloroplastic 114 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0517 Vvi-Chr4 4774850 4776688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0517 42 612 Glycoside Hydrolase AT3G49170 35.000 5.01e-121 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0517 - - vvi:100255899 1234.94