Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0515 ATGAGGTCATTCTTGACATATGTGCTTCTGGTTTGTTCATGTTTGGATATTCCTGGAATTCTGGGGGATATTGGCACAGCAACGTCGTACGATCCTCCATACTTGCCAACAAAATGCAAGGGCTACGACCAAAACCAATTCCCAGAAGGGGGACTGTTTGTTTCAGCAAGTGATGGGTTATGGGACAATGGAGCAGCCTGTGGCCGGAGATATCGGTTGCGGTGTATCAGTGGTCTAAGGCGACCATGCAAAGAAGGATCTATAGTTGTGCAGGTTGTTGATTTTTGTCAACACCGTCCCTGCCCAGCTACAATGGTTCTATCAAACAAAGCTTTTGATGCAATCTCAAGGATCCCAAGTGCCAAAATCAACATTGAATATGCACAGTAA 390 0.4538 MRSFLTYVLLVCSCLDIPGILGDIGTATSYDPPYLPTKCKGYDQNQFPEGGLFVSASDGLWDNGAACGRRYRLRCISGLRRPCKEGSIVVQVVDFCQHRPCPATMVLSNKAFDAISRIPSAKINIEYAQ* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0515 129 CDD DPBB_EG45-like 23 127 - -
Vvi4g0515 129 SUPERFAMILY Barwin-like endoglucanases 21 128 IPR036908 -
Vvi4g0515 129 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 25 129 IPR007112 -
Vvi4g0515 129 Pfam Lytic transglycolase 57 127 IPR009009 -
Vvi4g0515 129 Gene3D - 23 129 IPR036908 -
Vvi4g0515 129 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 5 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0515 Vvi-Chr4 4760940 4761762 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0515 - - vvi:104879020 273.092