Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0513 ATGGGCAGAAGAGGATTGCAGGTGTTTGATGATAATAGAAAAGGGGTTTTCCCTAATTGTGATTTGGGGCTCCAATGGGGTCTCCAAGAAGGGGCTTTTCACCCCGGAGGCCTATTCGCAAGCGTTGGTCAGGTGGGAATGGGGTTCGGAATTTCGCCGAATTCCCCAAATTCTCGAGACAACAACAATGCTGGTTTGAAACTTCCGTGTATGGACCTGTATGTGAAGTACGTATCCTCACCTGATGGGTTTAAAATCTTGGGAATTCCGGAGGCAGCGGAGGAAGGGAGTTCCAATAAGGGGAAGGTTGGTCTAAAATTGAAGGTCAAGGTTGCAAATCCTTCATTGAGGAGGTTGATAAGCGGTGCAATTGCAGGAGCGGTGTCACGGACAGCCGTTGCACCATTGGAGACTATAAGGACGCATTTGATGGTTGGAAGTAGTGGGCATTCTACGACTGAGGTCTTCAATAATATCATGAAGACTGATGGATGGAAGGGGTTGTTTAGGGGGAATCTTGTTAATGTGATCCGGGTTGCACCAAGCAAGGCTATAGAGCTATTTGCTTATGATACAGTCAACAAGAACTTGTCACCCATACCTGGAGAACAGCCCAAAATTCCTATTCCAGCATCCCTAGTCGCAGGGGCTTGTGCAGGAGTTAGCTCCACCTTGGTCACATATCCTCTTGAGTTACTCAAGACTCGATTAACAATACAGGGAGATGTTTATAATGGTCTACTTGATGCATTTGTGAAAATATTGCAAGAGGGTGGACCTGCAGAGCTCTACAGAGGCCTCACCCCCAGTCTAATTGGAGTAGTTCCATATGCTGCCACCAATTACTTTGCCTATGATACATTACGGAAAACCTACCGGAAAATTCTCAAGCAGGAGAAAATAGGTAACATTGAAACCCTTTTAATCGGGTCTCTAGCGGGTGCTATTTCAAGTAGTGCAACATTTCCCCTTGAGGTGGCCCGTAAGCACATGCAGGTAGGGGCTCTTAGTGGGAGACAAGTGTACAAAAATGTATTACATGCTCTGTCAAGCATACTGGAACAGGAGGGCATCCCGGGTTTGTATAAAGGCCTTGGCCCGAGCTGCTTGAAGCTGGTTCCTGCAGCTGGGATTTCATTCATGTGCTATGAGGCATGCAAGAGGATATTGGTAGAGAATGAGGAGGATGCATAG 1194 0.4682 MGRRGLQVFDDNRKGVFPNCDLGLQWGLQEGAFHPGGLFASVGQVGMGFGISPNSPNSRDNNNAGLKLPCMDLYVKYVSSPDGFKILGIPEAAEEGSSNKGKVGLKLKVKVANPSLRRLISGAIAGAVSRTAVAPLETIRTHLMVGSSGHSTTEVFNNIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSPIPGEQPKIPIPASLVAGACAGVSSTLVTYPLELLKTRLTIQGDVYNGLLDAFVKILQEGGPAELYRGLTPSLIGVVPYAATNYFAYDTLRKTYRKILKQEKIGNIETLLIGSLAGAISSSATFPLEVARKHMQVGALSGRQVYKNVLHALSSILEQEGIPGLYKGLGPSCLKLVPAAGISFMCYEACKRILVENEEDA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0513 397 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 196 IPR018108 -
Vvi4g0513 397 Gene3D Mitochondrial carrier domain 110 395 IPR023395 -
Vvi4g0513 397 PRINTS Mitochondrial carrier protein signature 131 145 IPR002067 GO:0055085
Vvi4g0513 397 PRINTS Mitochondrial carrier protein signature 264 282 IPR002067 GO:0055085
Vvi4g0513 397 PRINTS Mitochondrial carrier protein signature 171 191 IPR002067 GO:0055085
Vvi4g0513 397 PRINTS Mitochondrial carrier protein signature 310 332 IPR002067 GO:0055085
Vvi4g0513 397 PRINTS Mitochondrial carrier protein signature 222 240 IPR002067 GO:0055085
Vvi4g0513 397 PRINTS Mitochondrial carrier protein signature 118 131 IPR002067 GO:0055085
Vvi4g0513 397 Pfam Mitochondrial carrier protein 115 197 IPR018108 -
Vvi4g0513 397 Pfam Mitochondrial carrier protein 301 393 IPR018108 -
Vvi4g0513 397 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Vvi4g0513 397 PANTHER SOLUTE CARRIER FAMILY 25 112 390 - -
Vvi4g0513 397 ProSiteProfiles Solute carrier (Solcar) repeat profile. 207 291 IPR018108 -
Vvi4g0513 397 SUPERFAMILY Mitochondrial carrier 114 385 IPR023395 -
Vvi4g0513 397 ProSiteProfiles Solute carrier (Solcar) repeat profile. 301 389 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0513 Vvi-Chr4 4744789 4749138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0513 1 397 Organic Solute Cotransporters AT4G32400 68.090 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0513 K14684 - vvi:100261079 754.592