Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0512 ATGGAAGCAAATGCGGGGATGGTTGCTGGATCGCACAAGAGGAACGAGCTTGTTCGGATTCGCCATGATTCTGATAGTGGGCCAAAGCCCCTGAAGCATTTGAATGGCCAAATATGCCAGATTTGTGGAGATACTGTTGGCCTTACAGCCGCTGGTGATGTCTTTGTTGCTTGCAATGAGTGTGCCTTCCCAGTTTGTCGGCCTTGTTATGAGTATGAGCGCAAAGATGGAAACCAGTCTTGTCCCCAGTGCAAGACTAGATATAAGAGACACAAAGGGAGCCCTCGAGTTGAAGGAGATGATGAAGAGGATGATGTTGATGATATAGAAAATGAGTTCAATTATGCCCAAGGAAATAGCAAAGCAAGACGCCAGTGGCAGGGAGAAGATGCTGACCTTTCCTCTTCCTCCAGACATGAGTCTCAACAACCTATTCCCCTTCTCACCAATGGGCAGCCACTGTCTGGAGAAATTCCCAGTGGTACACCTGACAATCAATCTGTGCGAACCACGTCTGGTCCTTTGGGCCCTGGCGAAAAGCATGTGCATTCACTGCCTTATGTTGATCCCAGGCAGCCAGTTCCCGTGAGAATTGTGGACCCTTCAAAGGACTTGAATTCTTATGGCCTGGGTAATGTCGACTGGAAGGAAAGGGTTGAAGGTTGGAAACTCAAACAGGAGAAAAATATGATGCAGGTGACTAGCAGATACCCTGAAGGGAAGGGAGATTTAGAGGGCACTGGTTCAAATGGAGAGGAATTGCAAATGGCTGATGATGCTCGTCAACCTTTGAGTCGAGTGGTGCCTATTCCATCATCTCACCTTACGCCTTATCGTGTTGTGATCATACTTCGACTTATAATCTTGGGCTTTTTCTTACAATATCGTACAACTCACCCTGTAAAAGATGCATATCCTTTGTGGTTAACATCTGTTATCTGTGAGATTTGGTTTGCCTTATCATGGCTGTTGGATCAGTTCCCAAAATGGTATCCAATTAATCGTGAGACCTTCCTTGAAAGGCTTGCATTGAGATATGATCGTGAAGGGGAACCTTCACAGCTGGCTCCTATAGATGTATTTGTTAGTACGGTGGATCCTCTCAAAGAGCCTCCTCTTGTAACAGCTAACACTGTGCTGTCCATTCTTGCTGTGGATTACCCTGTCGACAAAGTCTCTTGCTATGTTTCAGATGATGGGTCTGCAATGTTGACCTTTGAAGCCCTTTCTGAAACTTCTGAATTTGCAAGGAAGTGGGTTCCCTTCTGCAAGAAGCACAACATCGAGCCTAGGGCCCCTGAGTTTTATTTTGCCCAAAAGATCGATTACTTGAAGGACAAGATACAGCCTTCTTTTGTGAAAGAGCGCAGGGCTATGAAGAGAGAATATGAAGAGTTTAAGATACGAATCAATGCACTTGTTGCTAAAGCACAGAAGACGCCAGAAGAAGGTTGGACAATGCAGGATGGCACTCCTTGGCCTGGAAATAACCCTAGGGATCATCCAGGAATGATTCAGGTGTTCTTAGGCCACAGTGGGGGTCTTGACACAGATGGAAATGAGCTGCCCAGACTAGTTTATGTTTCTCGTGAGAAAAGGCCGGGCTTCCAGCATCATAAGAAAGCTGGAGCAATGAATGCTTTGATTCGAGTTTCAGCTGTCTTGACCAATGGTGCTTATCTCTTGAATGTCGATTGTGATCACTACTTCAATAACAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGGATCCAGCTTTTGGAAAGAAAACCTGTTATGTACAATTCCCACAGCGGTTTGATGGCATTGATTTGCATGATCGATATGCTAATCGTAATATTGTCTTCTTTGATATCAACTTGAAAGGGCTGGATGGCGTCCAGGGGCCAGTCTATGTGGGAACAGGATGTTGTTTCAACAGGCAAGCGCTATATGGATATGATCCAGTGTTAACTGAGGCAGATTTGGAGCCAAATATTATTGTAAAGAGTTGTTGTGGTTCAAGAAAGAAGGGACGGGGTGGCAACAAGAAATACATTGATAAGAAGAGGCAAGTGAAAAGAACTGAATCAACCATCCCTATTTTCAATATGGAAGACATTGAAGAGGGTGTTGAAGGATATGATGATGAGAAGTCACTTCTTATGTCTCAGAAAAGCTTAGAGAAGCGATTTGGTCAGTCCCCTGTTTTTATTGCAGCCACCTTCATGGAACAGGGTGGCATTCCTCCATCAACTAATCCTGCAACCCTTTTAAAAGAGGCAATCCATGTTATTAGCTGTGGATATGAAGACAAGACTGACTGGGGCAAAGAGATTGGATGGATTTATGGTTCTGTGACTGAAGATATTTTGACTGGGTTTAAGATGCATGCACGAGGTTGGATTTCAATATATTGCATGCCACCCCGCCCAGCATTTAAGGGGTCTGCTCCCATCAATCTTTCTGATCGTTTGAATCAGGTTCTTCGATGGGCCTTGGGATCTATTGAGATCCTGCTGAGCAGGCATTGCCCCATATGGTATGGCTACAATGGGAGGCTCAAGCTCTTGGAGAGACTGGCATACATCAATACCATTGTTTATCCTCTCACTTCTATCCCCCTGATTGCTTACTGTGTCCTTCCTGCTATTTGCCTTCTAACAGGGAAATTCATCATTCCTGAGATAAGTAACTTTGCTAGCATGTGGTTTATTCTCCTCTTTGTCTCCATTTTCGCTACTGGAATACTTGAGCTTAGATGGAGTGGTGTCAGTATTGAAGACTGGTGGAGAAACGAGCAGTTCTGGGTCATTGGTGGTACATCAGCCCATCTCTTTGCCGTCTTCCAAGGGCTGTTGAAAGTGCTTGCTGGGATTGACACCAACTTCACTGTCACTTCAAAGGCATCTGATGATGATGGGGACTTTGCAGAGCTCTATGTGTTCAAATGGACATCTCTCCTCATCCCACCAACAACTGTGCTTGTCGTCAACTTGGTAGGCATTGTGGCTGGAGTTTCATATGCCATAAACAGCGGGTATCAGTCATGGGGGCCGCTTTTTGGAAAGCTCTTCTTCGCCATATGGGTGATTGTCCATCTTTACCCCTTCCTAAAGGGTTTGTTGGGTCGCCAAAATCGTACCCCCACAATTGTTATTGTCTGGTCCATTCTCCTTGCTTCCATCTTCTCCTTGCTGTGGGTGCGGATCGACCCTTTCACCAGCAGCTCCACAAAAGCCGCATCAGGTCAATGTGGCATCAACTGCTAG 3255 0.4535 MEANAGMVAGSHKRNELVRIRHDSDSGPKPLKHLNGQICQICGDTVGLTAAGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVEGDDEEDDVDDIENEFNYAQGNSKARRQWQGEDADLSSSSRHESQQPIPLLTNGQPLSGEIPSGTPDNQSVRTTSGPLGPGEKHVHSLPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQVTSRYPEGKGDLEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRTTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWYPINRETFLERLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETSEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKIRINALVAKAQKTPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAFGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGVQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIVKSCCGSRKKGRGGNKKYIDKKRQVKRTESTIPIFNMEDIEEGVEGYDDEKSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCVLPAICLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLVVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSSSTKAASGQCGINC* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0512 1084 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Vvi4g0512 1084 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
Vvi4g0512 1084 FunFam Cellulose synthase 475 649 - -
Vvi4g0512 1084 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 262 1051 - -
Vvi4g0512 1084 MobiDBLite consensus disorder prediction 137 173 - -
Vvi4g0512 1084 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Vvi4g0512 1084 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
Vvi4g0512 1084 CDD mRING-HC-C4C4_CesA 37 87 - -
Vvi4g0512 1084 Coils Coil 456 476 - -
Vvi4g0512 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Vvi4g0512 1084 SUPERFAMILY RING/U-box 22 111 - -
Vvi4g0512 1084 FunFam Cellulose synthase 21 112 - -
Vvi4g0512 1084 MobiDBLite consensus disorder prediction 75 189 - -
Vvi4g0512 1084 Pfam Cellulose synthase 358 1075 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0512 Vvi-Chr4 4723979 4732229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0512 1 1075 Glycosyltransferase AT4G32410 86.989 0.0 1925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0512 K10999 - vvi:100254408 2206.02