Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0503 ATGAGCCGACCAGGAGATTGGAACTGCAGGTCATGCCAGTATCTGAACTTCCAAAGGAGGGACTCGTGCCAACGCTGCGGAGAGCCAAGACCCGGTGACAGGGGAGATTATGGAGGTTTTAGTAGGGGCAGTTCATCGTTCGGGTTTACTGGCCCGGATGTTAGGCCTGGTGACTGGTACTGCACAATTGGAAACTGCGGAGCACATAACTTTGCCAGCCGCTCAAGCTGCTTCAAGTGCGGTGGGTTGAAGGACGAGTCATCTGGCGGATATGAGGGCGATATGTCTCGCCCAAGGGGTTTTGGGTTCGGTAGTGGTGGCAGCAGTGGCAGTGGCATTGGCCGCTCCGGGTGGAAATCCGGTGACTGGATTTGCAACAGGTCTGGCTGCAATGAACACAACTTTGCAAGCAGGATGGAGTGTTTCAGATGCAATGCGCCTAGGGACTCCGGCAACAAGTCTTCATATTCATCATAA 477 0.5409 MSRPGDWNCRSCQYLNFQRRDSCQRCGEPRPGDRGDYGGFSRGSSSFGFTGPDVRPGDWYCTIGNCGAHNFASRSSCFKCGGLKDESSGGYEGDMSRPRGFGFGSGGSSGSGIGRSGWKSGDWICNRSGCNEHNFASRMECFRCNAPRDSGNKSSYSS* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0503 158 ProSitePatterns Zinc finger RanBP2-type signature. 59 80 IPR001876 -
Vvi4g0503 158 PANTHER ZINC FINGER PROTEIN 52 153 - -
Vvi4g0503 158 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Vvi4g0503 158 SUPERFAMILY Ran binding protein zinc finger-like 114 151 IPR036443 -
Vvi4g0503 158 ProSitePatterns Zinc finger RanBP2-type signature. 123 144 IPR001876 -
Vvi4g0503 158 FunFam Ran-binding zinc finger protein 49 86 - -
Vvi4g0503 158 ProSiteProfiles Zinc finger RanBP2 type profile. 119 150 IPR001876 -
Vvi4g0503 158 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Vvi4g0503 158 FunFam Ran-binding zinc finger protein 112 150 - -
Vvi4g0503 158 SUPERFAMILY Ran binding protein zinc finger-like 50 87 IPR036443 -
Vvi4g0503 158 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Vvi4g0503 158 Gene3D - 115 151 - -
Vvi4g0503 158 Gene3D - 2 33 - -
Vvi4g0503 158 Gene3D - 52 86 - -
Vvi4g0503 158 ProSiteProfiles Zinc finger RanBP2 type profile. 55 86 IPR001876 -
Vvi4g0503 158 SMART zf_4 57 83 IPR001876 -
Vvi4g0503 158 SMART zf_4 121 147 IPR001876 -
Vvi4g0503 158 SMART zf_4 5 29 IPR001876 -
Vvi4g0503 158 Pfam Zn-finger in Ran binding protein and others 3 32 IPR001876 -
Vvi4g0503 158 Pfam Zn-finger in Ran binding protein and others 55 84 IPR001876 -
Vvi4g0503 158 Pfam Zn-finger in Ran binding protein and others 119 148 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0503 Vvi-Chr4 4633584 4634209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0503 - - vvi:100268075 304.679