Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0495 ATGTCCGCAAAGAGAGCTACGCTTCTTACAATCAACTCTCTCACTGCTTTATCCAAGGTATGTCCTTCTCCCAACTCCTCCTCGGCTTCATCTAAAACCCTAACTTTATTGAAGAATCTTAGTACTGCCGCTGAAAGAGCCGATTTTCAAATTTCTAACGGGTTTCAAAAAGAAAATTCTCCAGAGAATCACCAAAACCCTGATGGGTTTGACGCAGACAATCAGAATCATATAGAGTTTCAGCAAAAACCAAATGGGCAAAGCCCGGGTGGGTATTTTTCCGGAAGCCCACAAGGGTTTTATGGAGGCAACTCTGTGGAGGCTCAACAAAGCATAAACCCTAATGGGGGTTTTGAGGAAAACCTTAGAAATGAATTTCACAGGAACCCTATTGGGCAAAATGTGAATTTTAATGGGTATAATGGACAAAATTTCCGGGATTTGCAGCAAAATCCAGATGGGCTTTATGGAGGAAACTCCATGAACTCTTCCGAAGTTCATCAAGACTTAAATCCTAGAGGTTACAGGGAATATGCTAGAAACGAGTTTAAGCAGAACCCATTTAGCCAGAGTGGAAATTTTAGTAGGAATTATAGGCAAGGTTCTGGAGGCTTGCCGGCAAATCAGAACGAGCTTTGTAGGGAAAGCACTATAAATGAATATCAGCAGAACCTAGTTGGGCAAAGTGGAAATATTAATGGGTATTGTGGGCAAAATTATGGAGAATCATTGCAAAAGTCGAATGACTTTTATGGACAAAACAGAAATGTACAGAACTCATATTACAGTGAGGGACGAGCAGAAGTGAATCAGAATCGGAATGGGAATTGTCAACAGATCATATCGGAGACTCTGGGAGACCTAAATAGGACTTATGGAGAAAATATCAGGCAATTTCAGCAGAGCCCAAGTGGATATCATAGAGAAAATCTACAGCAGTATCAGCCAAGTGAGAATATGTACTATAGAGAAAATGTTGGTCAATATCAACAGAACCCAAATGTTGGTCAATATCAGCAGAACCCAAATATTGGTCAATATCAGCAGAACCCAAATGTTGCTCAATATCAGCAGAACCCAAATGTTGCTCAATATCAGCAGAACCCAAATGTTGCTCAATATCAAACAAACTCTAATGAGTTTCAGAATAGCATGGTGGGTTCTCCAAAATCAAGTAATTACAAACCAGATGGAGAGTCTTTAGAAGCTGCAGAGAGTAGCCAATATAGTGGCACTCTTGAGGAGGTGGATGATTTCTGCAAGGATGGAAAAGTAAAGGAAGCTATAGAAGTTTTGGGATTGTTGGAGAAGCAGCACACTCCTGTGGATTTGCCCAGGTACCTGCGGTTAATGAAGGCATGTGGGGAGGCTAAAGCACTACAAGAAGCAAAAGCTGTTCACGAGAGCCTTATCAAATCAGTATCCCCTCTCAAAGTGAGTACTTATAACAGGATCCTAGAGATGTATTCAAAATGTGGTTCCATGGATGATGCATATGCAGTGTTTAAGAAAATGCCAGAGCGCAATTTGACATCCTGGGACACCATGATAACATGGTTTGCTAAGAATGATCTTGGAGAGGAGGCAATTGATCTGTTCATTCAATTCAAGGAATCAGGACTGAAACCCGATGGTCAAATGTTTATTGGGGTCTTCATGGCCTGCAGTGTCTTAGGCGATGTCATTGAGGGGATGTTGCACTTTAATTCAATGAGCAAGGATTATGGCATTGTTCCATCAATGAAGCATTATGCGAGTATGGTGGACATGCTGGGTAATTCAGGGTACTTGGATGAAGCACTAGAGTTCGTTGAGAAGATGCCGCTAGAGCCAAGTGTCGATGTCTGGGAAACCTTGATGAATATATGTAGAGTTCAAGGGAATATGGAAATTGGGGATCGCTGTGCTGAGCTTGTTGAGCATCTGGAGCCCTCCCGCTTAACTGAGCAATCAAAAGCAGGCCTTGTACCAGTGAAAGCTTCTGACCTTGAGAAAGAGAAAGAGAAGAAGAAATTGGCCAGTCAAAATCTTTTAGAGGTTAGGAGCAGGGTCCATGAATATCGAGCGGGGGATACATCTCATCCTGAGAATGACAAGATCTACGCAAAACTAAGGGGATTGAAGGCACAAATGAAAGAGGCTGGTTATGTGCCAGAGACCAGATTTGTGTTGCATGACATAGACCAAGAAGGCAAGGAGGAAGCTCTTCTTGCTCATAGTGAGAGACTTGCTGTTGCTTACGGCCTTCTCAGCAGCCCAGCGCGTTCACCTATTAGGGTAATCAAGAATCTTCGTGTTTGTGGTGACTGTCACACTGCCCTGAAGATCATTTCAAAGCTTGTTGGCAGGGAGCTCATCATACGAGATGCTAAGAGATTCCACCACTTCAAAGATGGATTGTGTTCTTGCCGGGATTATTGGTGA 2424 0.4262 MSAKRATLLTINSLTALSKVCPSPNSSSASSKTLTLLKNLSTAAERADFQISNGFQKENSPENHQNPDGFDADNQNHIEFQQKPNGQSPGGYFSGSPQGFYGGNSVEAQQSINPNGGFEENLRNEFHRNPIGQNVNFNGYNGQNFRDLQQNPDGLYGGNSMNSSEVHQDLNPRGYREYARNEFKQNPFSQSGNFSRNYRQGSGGLPANQNELCRESTINEYQQNLVGQSGNINGYCGQNYGESLQKSNDFYGQNRNVQNSYYSEGRAEVNQNRNGNCQQIISETLGDLNRTYGENIRQFQQSPSGYHRENLQQYQPSENMYYRENVGQYQQNPNVGQYQQNPNIGQYQQNPNVAQYQQNPNVAQYQQNPNVAQYQTNSNEFQNSMVGSPKSSNYKPDGESLEAAESSQYSGTLEEVDDFCKDGKVKEAIEVLGLLEKQHTPVDLPRYLRLMKACGEAKALQEAKAVHESLIKSVSPLKVSTYNRILEMYSKCGSMDDAYAVFKKMPERNLTSWDTMITWFAKNDLGEEAIDLFIQFKESGLKPDGQMFIGVFMACSVLGDVIEGMLHFNSMSKDYGIVPSMKHYASMVDMLGNSGYLDEALEFVEKMPLEPSVDVWETLMNICRVQGNMEIGDRCAELVEHLEPSRLTEQSKAGLVPVKASDLEKEKEKKKLASQNLLEVRSRVHEYRAGDTSHPENDKIYAKLRGLKAQMKEAGYVPETRFVLHDIDQEGKEEALLAHSERLAVAYGLLSSPARSPIRVIKNLRVCGDCHTALKIISKLVGRELIIRDAKRFHHFKDGLCSCRDYW* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0495 807 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 419 744 IPR046960 GO:0003723|GO:0009451
Vvi4g0495 807 MobiDBLite consensus disorder prediction 55 118 - -
Vvi4g0495 807 MobiDBLite consensus disorder prediction 381 395 - -
Vvi4g0495 807 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Vvi4g0495 807 Coils Coil 663 683 - -
Vvi4g0495 807 MobiDBLite consensus disorder prediction 381 408 - -
Vvi4g0495 807 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 414 566 - -
Vvi4g0495 807 NCBIfam pentatricopeptide repeat 481 509 IPR002885 -
Vvi4g0495 807 NCBIfam pentatricopeptide repeat 512 544 IPR002885 -
Vvi4g0495 807 Pfam PPR repeat 584 607 IPR002885 -
Vvi4g0495 807 Pfam PPR repeat 512 541 IPR002885 -
Vvi4g0495 807 Pfam PPR repeat 480 509 IPR002885 -
Vvi4g0495 807 Gene3D Tetratricopeptide repeat domain 413 566 IPR011990 GO:0005515
Vvi4g0495 807 MobiDBLite consensus disorder prediction 55 120 - -
Vvi4g0495 807 Pfam DYW family of nucleic acid deaminases 715 807 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0495 Vvi-Chr4 4553793 4556216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0495 308 807 Glycoside Hydrolase AT3G49170 33.459 2.51e-92 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0495 - - vvi:100254270 1614.36