Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0493 ATGCAAACAAGCCCAGCCCATAGCAAACCAGGCCCAAATCACAATCGAGGACCGGTAGGGTTTAAGTTTAACAGCTTCGAGTCCAGTTTTCCAGGAAACTCATCTTCCCCATATCCAAGATACTCCCAAGACACCGTACCCACTTCGCAAATTCACCAAGAAACCACGCCTCTCTCACAAAACCATGTAATAGATGCTCTTCTGTGCCACGTCAATGACCCACAATCAGCTCTGAGATACTTTAAACGGGCCGAAACGCAGCGTGGTTTTATCAGAGGGGTAGATGCCTACTGTGTTTTGCTCCACATTTTGATGCGGTCGCCTGAGACTCATGGACATGCTCGGAAATTGCTTAATCGATATGTCTCGGGTGATTCGGATCCCAGTCCAGTTGTTTTTGTTGATCATCTAATCAACTGCGCAAAAAGGTTCGATTTTGAATTAGATCATCGGGTTTTTAATTATTTGCTAAATGCTTACATTAGGGCCAATCGAATTGAAAATGCAATCGATTGTTTCAATGCGATGATCTGTCAGGATGTGATTCCTTGGGTTCCGTATATGAATATTCTTTTGACTGCTCTGGTTAGGAGAAATATGATTGGGGAATTGCGAGATTTGTATAATAAAATGGTTTTGAGAGGAATATATGGTGATCACTTTACAGTACATGTCATGGTTCGAGCTTGTCTGAAAGAAGGGAGGGTGGAGGAGGCGGAGGAGTATTTTAGGGAAACAAAGGAAAGGGGTGTTAAACTTGATGCAGGGGCATATAGTATTATTATTCAGGCTGTTTGCAAGAAACCAAATTCGAATTTGGGTCTTGAGTTGTTGGAGGAGATGAAAGAGAGGGGGTGGGTTCCTTCAGAGGCCACTTTCACTAGTGTTATTGTTGCTTGTGTGGCACAGGGAAATATGGTGGAGGCTTTAAGGCTAAAGGAGGAGATGATAAATTGTGGGAAGCCGATGAATTTGGTGGTTGCAACGAGTTTAATGAAGGGGTATTGTGCTCAAGGCAATTTGGATAGTGCTTTGAATTTGTTTAATAAGATAACTGAAGATGGACTTTTTCCGAACAAAGTTACATATTCAGTCTTGATTGAAGGTTGCTGTAACAGTGGGAACATTGAAAAGGCTTCTGAACTGTACACTCAAATGAAACTCAATGGTATCCCGCCTAGTGTGTTTAATGTGAATTCCCTATTACGGGGTTACTTGAAAGCTCCATTGTGGGAAGAAGCATCCAAGCTGTTTGATGAAGCGGTTGATTGTGGTGTTGCCAATATTTTTACGTATAATATCATGATGTCGTGGCTATGCAAAGGAGGCAAGATGGATGAAGCTTGCAGTTTATTGGATAATATGGTAAATCAAGGAATGGTACCCAATGTAGTTTCTTACAATGACATGATACTTGGCCACTGCAGGAAAGGGAATATGGATATGGCATCCAGTGTATTCTCAGACATGCTCGCAAGGGATTTGAAACCAAATGTGGTCACTTATTCTATTTTGATAGATGGGAATTTCAAAAAAGGTGATAGTGAAAAAGCCTTAGACTTGTTTGACCAAATGCTGAGCTTAAATATTGCCCCTACTGACTTTACATTTAATACAATTATCAATGGTTTGTGCAAAGTTGGCCAAATGTCAGAGGCAAGGGATAAGCTGAAGAATTTTTTGGAGGAGGGTTTCATTCCAAGCTGTATGACTTACAACAGCATTGTAGATGGATTTATCAAGGAGGGTAACATCGATTCTGCATTGGCTGTTTATAGAGAGATGTGTGAATTTGGAGTTTCCCCAAATGTTGTTACTTACACTAGCTTGATTAATGGGTTCTGCAAAAGTAATAGGATTGATCTCGCTTTGAAAACGCGGGATGAAATGAGAGAAAAGGGTCTTGAATTGGATGTTACAGCATATAGTGCTCTTATTGATGGTTTTTGCAAAAGAAGGGATATGGAAAGTGCACAAGATCTTTTCTTTGAACTCCTTGAAGTTGGCTTATCCCCAAATAGAATTGTTTACAACAGCATGATTAGTGGCTTCAGAGATCTGAATAACATGGAAGCAGCACTTGTTTGGTATAAGAAGATGATCAATGACAGGATTCCTTGTGATTTAGGAACATACACAACTTTGATTGATGGATTGCTGAAAGAAGGTAGACTTGTCTTTGCATCAGATCTTTACATGGAGATGCTTTCCAAGGGTATTGTGCCTGATATTATCACATTTCATGTTCTGGTAAATGGACTTTGCAATAAAGGACAGCTAGAGAATGCACGGAAGATCTTGGAAGAGATGGATAGGAAAAATATGACTCCTAGTGTTCTTATTTATAACACACTGATAGCTGGTTATTTCAGGGAAGGGAATTTGAAAGAGGCTTTTACATTGCATGATGAGATGCTTGACAGAGGCCTTGTACCTGATGATGTAACCTATGATATTCTCATAAATGGAAAGTTCAAAGGAGATCGATCCCTTTCTAGGCCTTCACATGGTTAA 2514 0.4021 MQTSPAHSKPGPNHNRGPVGFKFNSFESSFPGNSSSPYPRYSQDTVPTSQIHQETTPLSQNHVIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDRSLSRPSHG* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 299 408 IPR011990 GO:0005515
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 409 512 IPR011990 GO:0005515
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 44 203 IPR011990 GO:0005515
Vvi4g0493 837 SUPERFAMILY HCP-like 409 636 - -
Vvi4g0493 837 PANTHER ATPASE EXPRESSION PROTEIN 3 219 584 - -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 708 742 IPR002885 -
Vvi4g0493 837 MobiDBLite consensus disorder prediction 26 52 - -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 603 637 IPR002885 -
Vvi4g0493 837 SUPERFAMILY HCP-like 642 810 - -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 638 672 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 778 812 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 399 426 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 189 216 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 292 320 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 152 178 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 676 704 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 430 464 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 745 778 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 535 569 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 189 219 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 329 359 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 675 708 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 500 533 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 605 639 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 258 290 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 361 394 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 152 184 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 465 499 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 222 255 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 571 604 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 711 744 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 781 813 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 292 321 IPR002885 -
Vvi4g0493 837 NCBIfam pentatricopeptide repeat 641 673 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 701 772 IPR011990 GO:0005515
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 630 700 IPR011990 GO:0005515
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 212 285 IPR011990 GO:0005515
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 773 830 IPR011990 GO:0005515
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 743 777 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 564 595 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 427 456 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat 529 554 IPR002885 -
Vvi4g0493 837 MobiDBLite consensus disorder prediction 1 52 - -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Vvi4g0493 837 Gene3D Tetratricopeptide repeat domain 513 629 IPR011990 GO:0005515
Vvi4g0493 837 Pfam PPR repeat family 602 651 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat family 777 823 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat family 711 756 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat family 462 508 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat family 324 372 IPR002885 -
Vvi4g0493 837 Pfam PPR repeat family 226 267 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 568 602 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Vvi4g0493 837 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Vvi4g0493 837 SUPERFAMILY HCP-like 229 459 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0493 284 829 Glycosyltransferase AT1G05670 31.351 4.79e-89 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0493 - K15336 vvi:100259391 1634.77