Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0492 ATGAAATTCAGGAAAGGGAGTAAAGTGGAGGTATTGAACAAAAAGGAAGTGCCTTCAGGTGCCTGGCACTGTGCTGAAATTATCTCCGGTAATGGGCACAACTACAGTGTTAGGTATGACTCTTATCTGGGCATGACAAATAAGGCGAATGTGGATAGGGTGTCTAGGAAGGCTATTAGACCTTGCCCTCTCCCTGTGAAAGGTATGGAAAGTTGGGTGACTGGTGATGTTGTGGAGGTGTTCAATGATGGTTCTTGGAAATGTGCTATGGTTTTGAAGGTTACATGTGCGGTTTACTATTTGGTTAGGCTACTTGGATCTTGCCACGAATTTGAAGTCCACAAGTCTAACATCAGAGTGCGACAAGCTTGGATAGATGACAAATGGGTTGTGATTGGACAGGGCTCTATCACTTTTGAAGATGTGAGAGTCAACAAGCTGTTAACTTCAAATTGTCATCAGAAGATGAGTTTCCAGGTGCCACAAGCTGATATGAAGCTAAAATTGCAAGCAGGAGATGATTTTTTTCAGAAGCATGCTGATTTCCAGGATTCTCCTATGGTCTCATCCAAGACATTGAAGAGAGCATCCCCATATTGCTCCTCTGGTCTTGAAGCATACTCTGGAAACATTCAGAAGATGAGAGCAATCGAAAATGGTGGACGCCAACGAGTGATCACCGGGTATTCATCTCCATTACGAGCAAAGGTAGATGCTGTTGCTTACCCACGATTGAATCTGGGTGAAAAATACATGCATGCTTCCTTTAATGACCGTTCAACTAAATATTGCGAAATGGAGAGGGGAAAACCAAATGGTGTTGATTGTTTTCTTGCAAGAAGTTCAGAATCTAATGATTCTGATAGCATGTCATGCTCTGTTGGTAGTTGTAGCATTAATAATAATGGTCCTAATAAGTTTTCCAGTTGTATTTTAGCACATCCTAGACAAGATACAGATGACCTTTGTAGTGATGCTGAATCATTTTACCATTGGGGAGATGAGGGAGATGAGGAAGATGAGGAAGATGAGAGAGATGAGAGAGATGAGGGAGATGAGGAAGATGAGAGATATGAGGGAGATGTGAGAGATGAGGAGGAAAAGTGCCCCATTTCTCTTGAAAAGGAATTAGCAGCAAGTATCCATAGTTTAGAGTTGCATGCTTATCGCCGCACTCTAGCGGCATTGCATGCTTCTGGGCCTTTAAGTTGGGAACAATCAACAATGTTGACAAATCTTCGCTGTTCACTTCATATTTCAAATGATGAACATTTGATGGAGCTAAAGAACTTAATATCTGCTGGAATAAATTTTTGTAATTAA 1323 0.4142 MKFRKGSKVEVLNKKEVPSGAWHCAEIISGNGHNYSVRYDSYLGMTNKANVDRVSRKAIRPCPLPVKGMESWVTGDVVEVFNDGSWKCAMVLKVTCAVYYLVRLLGSCHEFEVHKSNIRVRQAWIDDKWVVIGQGSITFEDVRVNKLLTSNCHQKMSFQVPQADMKLKLQAGDDFFQKHADFQDSPMVSSKTLKRASPYCSSGLEAYSGNIQKMRAIENGGRQRVITGYSSPLRAKVDAVAYPRLNLGEKYMHASFNDRSTKYCEMERGKPNGVDCFLARSSESNDSDSMSCSVGSCSINNNGPNKFSSCILAHPRQDTDDLCSDAESFYHWGDEGDEEDEEDERDERDEGDEEDERYEGDVRDEEEKCPISLEKELAASIHSLELHAYRRTLAALHASGPLSWEQSTMLTNLRCSLHISNDEHLMELKNLISAGINFCN* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0492 440 SMART ENT_2 377 438 IPR005491 -
Vvi4g0492 440 Pfam ENT domain 380 430 IPR005491 -
Vvi4g0492 440 SUPERFAMILY ENT-like 373 433 IPR036142 -
Vvi4g0492 440 MobiDBLite consensus disorder prediction 332 361 - -
Vvi4g0492 440 Pfam Agenet domain 6 63 IPR008395 -
Vvi4g0492 440 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 2 406 - -
Vvi4g0492 440 MobiDBLite consensus disorder prediction 330 366 - -
Vvi4g0492 440 SMART agenet_At_2 1 67 IPR014002 -
Vvi4g0492 440 SMART agenet_At_2 70 126 IPR014002 -
Vvi4g0492 440 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 377 440 IPR005491 -
Vvi4g0492 440 Gene3D ENT domain 372 434 IPR036142 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0492 Vvi-Chr4 4535504 4537192 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0492 - - vvi:100264564 832.017